Variant report

Variant	rs529493033
Chromosome Location	chr2:168149830-168149831
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-XIRP2-1	chr2:168149681-168149844	XLOC_001742

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875377	chr2:168084857-168203116	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
2	nsv875378	chr2:168107491-168297961	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
3	esv3364733	chr2:168109919-168302141	Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
4	esv3412741	chr2:168148456-168151654	Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Enhancers Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:168148400-168150600	Active TSS	ES-I3 Cell Line	embryonic stem cell
2	chr2:168148600-168150000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr2:168148600-168150000	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
4	chr2:168148600-168150200	Active TSS	iPS-20b Cell Line	embryonic stem cell
5	chr2:168148600-168150200	Active TSS	NH-A	brain
6	chr2:168148600-168150600	Active TSS	Right Atrium	heart
7	chr2:168148600-168150800	Active TSS	ES-WA7 Cell Line	embryonic stem cell
8	chr2:168148600-168150800	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr2:168148600-168150800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr2:168148600-168151600	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr2:168148600-168151600	Active TSS	Rectal Mucosa Donor 31	rectum
12	chr2:168148600-168151800	Active TSS	H1 Cell Line	embryonic stem cell
13	chr2:168148600-168151800	Active TSS	Breast Myoepithelial Primary Cells	Breast
14	chr2:168148600-168151800	Active TSS	Brain Hippocampus Middle	brain
15	chr2:168148600-168151800	Active TSS	Brain Inferior Temporal Lobe	brain
16	chr2:168148600-168151800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
17	chr2:168148600-168151800	Active TSS	NHLF	lung
18	chr2:168148600-168152000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr2:168148600-168152000	Active TSS	Brain Anterior Caudate	brain
20	chr2:168148600-168152200	Active TSS	iPS-15b Cell Line	embryonic stem cell
21	chr2:168148800-168150000	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr2:168148800-168150000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
23	chr2:168148800-168150000	Bivalent/Poised TSS	Primary T regulatory cells fromperipheralblood	blood
24	chr2:168148800-168150000	Active TSS	Cortex derived primary cultured neurospheres	brain
25	chr2:168148800-168150000	Active TSS	Fetal Lung	lung
26	chr2:168148800-168150000	Active TSS	Psoas Muscle	Psoas
27	chr2:168148800-168150000	Active TSS	Right Ventricle	heart
28	chr2:168148800-168150200	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr2:168148800-168150200	Active TSS	Pancreatic Islets	Pancreatic Islet
30	chr2:168148800-168150200	Active TSS	Left Ventricle	heart
31	chr2:168148800-168150600	Active TSS	HUES64 Cell Line	embryonic stem cell
32	chr2:168148800-168150600	Active TSS	NHDF-Ad	bronchial
33	chr2:168148800-168150800	Active TSS	Fetal Kidney	kidney
34	chr2:168148800-168151400	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr2:168148800-168151400	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
36	chr2:168148800-168151600	Active TSS	H9 Cell Line	embryonic stem cell
37	chr2:168148800-168151600	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr2:168148800-168151600	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
39	chr2:168148800-168151600	Active TSS	Brain Substantia Nigra	brain
40	chr2:168148800-168151600	Active TSS	Colon Smooth Muscle	Colon
41	chr2:168148800-168151800	Active TSS	HUES48 Cell Line	embryonic stem cell
42	chr2:168148800-168151800	Active TSS	Brain Cingulate Gyrus	brain
43	chr2:168148800-168151800	Active TSS	Fetal Brain Female	brain
44	chr2:168148800-168151800	Active TSS	Rectal Smooth Muscle	rectum
45	chr2:168149000-168150000	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
46	chr2:168149000-168150000	Active TSS	Primary T helper naive cells fromperipheralblood	blood
47	chr2:168149000-168150000	Bivalent/Poised TSS	Primary T helper cells PMA-I stimulated	--
48	chr2:168149000-168150000	Active TSS	Primary T helper 17 cells PMA-I stimulated	--
49	chr2:168149000-168150000	Bivalent/Poised TSS	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr2:168149000-168150000	Active TSS	Duodenum Mucosa	Duodenum

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