Variant report

Variant	rs529534766
Chromosome Location	chr11:32612817-32612818
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr11:32612579-32612863	GM12891	blood:	n/a	n/a
2	POLR2A	chr11:32610985-32616745	K562	blood:	n/a	n/a
3	POLR2A	chr11:32612602-32612905	GM12878	blood:	n/a	n/a
4	POLR2A	chr11:32612656-32616287	HepG2	liver:	n/a	n/a
5	POLR2A	chr11:32612507-32612886	GM12878	blood:	n/a	n/a
6	POLR2A	chr11:32612525-32612914	GM12892	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:32605232..32608580-chr11:32610157..32613118,3	MCF-7	breast:

Variant related genes	Relation type
EIF3M	TF binding region
ENSG00000149100	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3459086	chr11:32611095-32615504	Strong transcription Weak transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	esv3459097	chr11:32611095-32615504	Genic enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv983000	chr11:32612306-32614264	Strong transcription Weak transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:32606800-32613400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:32606800-32613400	Weak transcription	Aorta	Aorta
3	chr11:32606800-32616000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr11:32607000-32617000	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr11:32607800-32613200	Weak transcription	Small Intestine	intestine
6	chr11:32607800-32621200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr11:32607800-32628400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr11:32608200-32619400	Strong transcription	HUES6 Cell Line	embryonic stem cell
9	chr11:32608400-32616200	Genic enhancers	Primary monocytes fromperipheralblood	blood
10	chr11:32608400-32619000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
11	chr11:32608400-32619400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr11:32608400-32619400	Strong transcription	HUES48 Cell Line	embryonic stem cell
13	chr11:32608400-32628200	Strong transcription	HSMM	muscle
14	chr11:32608600-32617000	Strong transcription	A549	lung
15	chr11:32608600-32618400	Strong transcription	HUES64 Cell Line	embryonic stem cell
16	chr11:32608600-32619400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr11:32608600-32628400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr11:32608800-32628000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr11:32609000-32628200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr11:32609000-32629600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr11:32609200-32623400	Strong transcription	Hela-S3	cervix
22	chr11:32609200-32623800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr11:32609400-32618400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr11:32609400-32630200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr11:32609600-32618600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr11:32609600-32618600	Strong transcription	Fetal Stomach	stomach
27	chr11:32609800-32617800	Strong transcription	HepG2	liver
28	chr11:32609800-32617800	Strong transcription	K562	blood
29	chr11:32609800-32619800	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr11:32609800-32626000	Strong transcription	NHDF-Ad	bronchial
31	chr11:32609800-32628000	Strong transcription	Fetal Thymus	thymus
32	chr11:32610000-32616000	Strong transcription	Fetal Kidney	kidney
33	chr11:32610000-32616000	Strong transcription	NHLF	lung
34	chr11:32610000-32616200	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
35	chr11:32610000-32616400	Strong transcription	iPS-15b Cell Line	embryonic stem cell
36	chr11:32610000-32617200	Strong transcription	ES-I3 Cell Line	embryonic stem cell
37	chr11:32610000-32617200	Strong transcription	NHEK	skin
38	chr11:32610000-32618600	Strong transcription	H9 Cell Line	embryonic stem cell
39	chr11:32610000-32618600	Strong transcription	Rectal Smooth Muscle	rectum
40	chr11:32610000-32618800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr11:32610000-32619200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
42	chr11:32610000-32619800	Strong transcription	Duodenum Smooth Muscle	Duodenum
43	chr11:32610000-32619800	Strong transcription	Left Ventricle	heart
44	chr11:32610000-32620200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr11:32610000-32621200	Strong transcription	Liver	Liver
46	chr11:32610000-32621200	Strong transcription	Rectal Mucosa Donor 29	rectum
47	chr11:32610000-32626000	Strong transcription	Placenta	Placenta
48	chr11:32610000-32626000	Strong transcription	Osteobl	bone
49	chr11:32610000-32627400	Strong transcription	Rectal Mucosa Donor 31	rectum
50	chr11:32610000-32627800	Strong transcription	H1 Cell Line	embryonic stem cell

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