Variant report

Variant	rs529548859
Chromosome Location	chr7:27659553-27659554
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949025	chr7:27578167-28075172	Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	esv1802647	chr7:27658495-27673924	ZNF genes & repeats Weak transcription Strong transcription Enhancers Genic enhancers Bivalent Enhancer Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:27646800-27659600	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr7:27647000-27660200	Weak transcription	Small Intestine	intestine
3	chr7:27648600-27659800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr7:27651800-27674200	Weak transcription	Hela-S3	cervix
5	chr7:27654400-27696400	Weak transcription	Gastric	stomach
6	chr7:27655200-27660400	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr7:27655400-27665200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr7:27655600-27660600	ZNF genes & repeats	Fetal Intestine Small	intestine
9	chr7:27656400-27659600	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr7:27656400-27659600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr7:27657000-27660200	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
12	chr7:27657000-27660400	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr7:27657200-27662200	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr7:27657400-27661800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr7:27657400-27661800	ZNF genes & repeats	Fetal Intestine Large	intestine
16	chr7:27657400-27662600	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
17	chr7:27657800-27660000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr7:27657800-27660000	ZNF genes & repeats	Fetal Muscle Trunk	muscle
19	chr7:27657800-27660200	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr7:27658000-27659800	ZNF genes & repeats	NHDF-Ad	bronchial
21	chr7:27658000-27661400	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
22	chr7:27658200-27661200	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr7:27658200-27661400	ZNF genes & repeats	Primary T cells fromperipheralblood	blood
24	chr7:27658400-27659800	ZNF genes & repeats	Skeletal Muscle Male	skeletal muscle
25	chr7:27658400-27660200	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
26	chr7:27658400-27660200	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr7:27658400-27660400	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
28	chr7:27658400-27661000	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr7:27658400-27661000	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr7:27658400-27661200	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
31	chr7:27658400-27661200	ZNF genes & repeats	Fetal Lung	lung
32	chr7:27658400-27661400	ZNF genes & repeats	Liver	Liver
33	chr7:27658400-27662000	ZNF genes & repeats	Dnd41	blood
34	chr7:27658600-27660000	ZNF genes & repeats	Muscle Satellite Cultured Cells	--
35	chr7:27658600-27661000	ZNF genes & repeats	Brain Substantia Nigra	brain
36	chr7:27658600-27661000	ZNF genes & repeats	Skeletal Muscle Female	skeletal muscle
37	chr7:27658600-27661200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
38	chr7:27658600-27661200	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
39	chr7:27658800-27659600	Weak transcription	HUES6 Cell Line	embryonic stem cell
40	chr7:27658800-27659600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
41	chr7:27658800-27659600	Weak transcription	Placenta	Placenta
42	chr7:27658800-27659600	Weak transcription	Fetal Stomach	stomach
43	chr7:27658800-27659600	Weak transcription	Left Ventricle	heart
44	chr7:27658800-27659600	Weak transcription	Pancreas	Pancrea
45	chr7:27658800-27659600	Weak transcription	HSMM	muscle
46	chr7:27658800-27660400	ZNF genes & repeats	Primary T cells from cord blood	blood
47	chr7:27658800-27687800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
48	chr7:27658800-27688600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
49	chr7:27659200-27659600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
50	chr7:27659200-27660800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links