Variant report

Variant	rs529593766
Chromosome Location	chr3:53032707-53032708
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 152 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:152 , 50 per page) page: 1 2 3 4

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3446915	chr3:52786850-53049217	Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	esv1818974	chr3:52966316-53096394	Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv3823	chr3:53003659-53051063	Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv2756989	chr3:53006055-53039455	Enhancers Weak transcription Genic enhancers Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	esv2759149	chr3:53006055-53039455	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv1001449	chr3:53009379-53039104	Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv998180	chr3:53011207-53039267	Weak transcription Genic enhancers Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	esv1802390	chr3:53011741-53039205	Enhancers Genic enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv1008590	chr3:53011741-53039267	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	nsv1002814	chr3:53011741-53039665	Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Strong transcription Active TSS Genic enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	nsv1011757	chr3:53012195-53039104	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
12	nsv1011874	chr3:53019183-53039104	Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
13	nsv1003328	chr3:53019183-53039665	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
14	nsv1006561	chr3:53019313-53039104	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
15	nsv1002983	chr3:53021057-53039104	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
16	nsv1003421	chr3:53021057-53039205	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
17	nsv1004368	chr3:53021057-53039665	Enhancers Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
18	nsv1000407	chr3:53022010-53033136	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
19	nsv1004160	chr3:53022010-53039104	Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
20	nsv1004730	chr3:53022010-53039267	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
21	nsv1014506	chr3:53022010-53039665	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
22	nsv1003254	chr3:53022855-53038890	Strong transcription Weak transcription Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
23	nsv1003591	chr3:53022855-53039104	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
24	nsv1010511	chr3:53022855-53039477	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
25	nsv999427	chr3:53022855-53041873	Weak transcription Flanking Active TSS Genic enhancers Enhancers Strong transcription ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
26	nsv1007659	chr3:53022881-53039104	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
27	nsv1014099	chr3:53022912-53039104	Enhancers ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
28	nsv1011388	chr3:53022912-53039665	Strong transcription Enhancers Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
29	nsv1014633	chr3:53022937-53034528	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
30	nsv1007315	chr3:53022937-53037242	Enhancers Strong transcription ZNF genes & repeats Weak transcription Genic enhancers Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
31	nsv1013928	chr3:53022937-53038932	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
32	nsv1009671	chr3:53022937-53039104	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
33	nsv1013733	chr3:53022937-53039205	Strong transcription Active TSS Enhancers Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
34	nsv1002820	chr3:53022937-53039477	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
35	nsv1012396	chr3:53023199-53037242	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
36	nsv1003018	chr3:53023199-53039104	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
37	nsv1013774	chr3:53023199-53039267	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
38	nsv1004325	chr3:53023199-53039665	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
39	esv2763768	chr3:53023211-53045925	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
40	esv1796300	chr3:53024022-53038983	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
41	nsv590309	chr3:53024216-53038983	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
42	nsv876799	chr3:53024216-53060637	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
43	esv1794126	chr3:53024561-53038654	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
44	esv1796059	chr3:53026638-53039214	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
45	nsv590310	chr3:53026714-53035195	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
46	esv29989	chr3:53026714-53038786	Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
47	nsv590311	chr3:53026714-53038983	Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
48	nsv517046	chr3:53026714-53046216	Weak transcription Enhancers Genic enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
49	nsv437713	chr3:53026714-53055522	Enhancers Weak transcription Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
50	esv999683	chr3:53026737-53039787	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:52965000-53039800	Weak transcription	Left Ventricle	heart
2	chr3:53018000-53044200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr3:53018200-53045200	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr3:53018600-53032800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr3:53019000-53057200	Weak transcription	Primary T cells fromperipheralblood	blood
6	chr3:53019200-53032800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr3:53019200-53039600	Weak transcription	GM12878-XiMat	blood
8	chr3:53019600-53056400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
9	chr3:53019800-53044400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
10	chr3:53020600-53057000	Weak transcription	Dnd41	blood
11	chr3:53022600-53043000	Weak transcription	Primary B cells from peripheral blood	blood
12	chr3:53022600-53050400	Weak transcription	Primary B cells from cord blood	blood
13	chr3:53025200-53039000	Weak transcription	Pancreatic Islets	Pancreatic Islet
14	chr3:53025600-53061600	Weak transcription	Lung	lung
15	chr3:53026200-53037800	Weak transcription	Primary T helper cells PMA-I stimulated	--
16	chr3:53026200-53042400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
17	chr3:53026200-53044200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
18	chr3:53027200-53043400	Weak transcription	Primary T helper cells fromperipheralblood	blood
19	chr3:53027600-53061600	Weak transcription	Liver	Liver
20	chr3:53027800-53051000	Weak transcription	Primary neutrophils fromperipheralblood	blood
21	chr3:53028000-53032800	Weak transcription	Esophagus	oesophagus
22	chr3:53028400-53044200	Weak transcription	Adipose Nuclei	Adipose
23	chr3:53029600-53033200	Weak transcription	A549	lung
24	chr3:53029800-53032800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr3:53030000-53033200	Weak transcription	Brain Angular Gyrus	brain
26	chr3:53030200-53034200	Weak transcription	Brain Inferior Temporal Lobe	brain
27	chr3:53030200-53059400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr3:53030400-53052400	Weak transcription	Primary T cells from cord blood	blood
29	chr3:53030800-53050400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
30	chr3:53031000-53033200	Weak transcription	Gastric	stomach
31	chr3:53031000-53039800	Weak transcription	Sigmoid Colon	Sigmoid Colon
32	chr3:53031400-53032800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
33	chr3:53031400-53033800	Strong transcription	Fetal Intestine Small	intestine
34	chr3:53031600-53034600	Weak transcription	Thymus	Thymus
35	chr3:53031600-53038000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
36	chr3:53031800-53032800	Weak transcription	Right Ventricle	heart
37	chr3:53031800-53033600	Active TSS	Hela-S3	cervix
38	chr3:53032000-53035200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
39	chr3:53032400-53033600	Strong transcription	Fetal Stomach	stomach
40	chr3:53032400-53033800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr3:53032600-53033000	Strong transcription	Pancreas	Pancrea
42	chr3:53032600-53033200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr3:53032600-53033400	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
44	chr3:53032600-53033400	Weak transcription	Small Intestine	intestine
45	chr3:53032600-53033400	Genic enhancers	Spleen	Spleen
46	chr3:53032600-53033600	ZNF genes & repeats	Fetal Intestine Large	intestine
47	chr3:53032600-53033600	Flanking Active TSS	Placenta	Placenta
48	chr3:53032600-53033800	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
49	chr3:53032600-53033800	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--

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