Variant report

Variant	rs529600327
Chromosome Location	chr15:77545714-77545715
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3440794	chr15:76764595-77571114	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv1040852	chr15:77160237-78137541	Enhancers Flanking Active TSS Active TSS Strong transcription Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
3	nsv1045376	chr15:77354671-77801487	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
4	nsv542443	chr15:77354671-77801487	Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
5	esv1832234	chr15:77451350-77694607	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv916323	chr15:77485765-78121259	Enhancers Strong transcription Weak transcription Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
7	nsv1041064	chr15:77497903-77631698	Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
8	nsv1051744	chr15:77511489-77679160	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
9	nsv1044270	chr15:77534919-77611256	Enhancers Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
10	nsv542445	chr15:77534919-77611256	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
11	esv1830237	chr15:77535785-77694607	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
12	nsv869991	chr15:77545316-77578885	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
13	nsv976867	chr15:77545319-77570795	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:79 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:77505800-77559400	Weak transcription	Psoas Muscle	Psoas
2	chr15:77517400-77559000	Weak transcription	Ovary	ovary
3	chr15:77517600-77545800	Weak transcription	Primary T helper cells fromperipheralblood	blood
4	chr15:77519400-77551800	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr15:77519600-77551800	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr15:77519800-77557200	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr15:77520200-77578800	Weak transcription	Small Intestine	intestine
8	chr15:77526400-77547600	Weak transcription	Liver	Liver
9	chr15:77527000-77559000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr15:77527000-77576200	Weak transcription	Monocytes-CD14+_RO01746	blood
11	chr15:77528400-77553000	Weak transcription	Aorta	Aorta
12	chr15:77528800-77559200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr15:77528800-77571400	Weak transcription	Right Ventricle	heart
14	chr15:77528800-77574400	Weak transcription	HepG2	liver
15	chr15:77528800-77577200	Weak transcription	Spleen	Spleen
16	chr15:77528800-77579200	Weak transcription	Brain Angular Gyrus	brain
17	chr15:77529000-77548600	Weak transcription	Gastric	stomach
18	chr15:77529200-77545800	Weak transcription	Primary monocytes fromperipheralblood	blood
19	chr15:77529200-77546400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
20	chr15:77529200-77546800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr15:77529200-77561400	Weak transcription	Primary T cells from cord blood	blood
22	chr15:77529400-77547800	Weak transcription	GM12878-XiMat	blood
23	chr15:77529400-77551800	Weak transcription	Rectal Smooth Muscle	rectum
24	chr15:77529400-77552600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr15:77529400-77558600	Weak transcription	Fetal Muscle Leg	muscle
26	chr15:77529400-77558600	Weak transcription	Lung	lung
27	chr15:77529400-77558800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr15:77529400-77559000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr15:77529400-77559600	Weak transcription	Primary hematopoietic stem cells	blood
30	chr15:77529400-77565400	Weak transcription	Dnd41	blood
31	chr15:77529400-77574400	Weak transcription	Muscle Satellite Cultured Cells	--
32	chr15:77537600-77545800	Weak transcription	Brain Cingulate Gyrus	brain
33	chr15:77538400-77546000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
34	chr15:77539600-77553000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr15:77540400-77548000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr15:77540400-77551800	Weak transcription	Colon Smooth Muscle	Colon
37	chr15:77540600-77552800	Weak transcription	Fetal Heart	heart
38	chr15:77541000-77550000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr15:77541800-77546800	Weak transcription	HMEC	breast
40	chr15:77541800-77589800	Weak transcription	Fetal Intestine Small	intestine
41	chr15:77542000-77575200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
42	chr15:77542000-77575200	Weak transcription	HUVEC	blood vessel
43	chr15:77542200-77548400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
44	chr15:77542200-77558800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr15:77542200-77580000	Weak transcription	Sigmoid Colon	Sigmoid Colon
46	chr15:77544200-77548000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr15:77544400-77546000	Weak transcription	Hela-S3	cervix
48	chr15:77544400-77546200	Weak transcription	Primary neutrophils fromperipheralblood	blood
49	chr15:77544400-77546800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
50	chr15:77544400-77548000	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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