Variant report

Variant	rs529611983
Chromosome Location	chr6:128232381-128232382
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1849854	chr6:128143774-128287313	Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv1024516	chr6:128184182-128298278	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases
3	esv3394071	chr6:128232019-128233225	Enhancers ZNF genes & repeats Weak transcription Strong transcription Genic enhancers	n/a	n/a	inside rSNPs	diseases
4	esv3473313	chr6:128232066-128233200	ZNF genes & repeats Weak transcription Strong transcription Enhancers Genic enhancers	n/a	n/a	inside rSNPs	diseases
5	esv3473314	chr6:128232095-128233210	Strong transcription Enhancers Weak transcription Genic enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
6	esv3473315	chr6:128232134-128233123	Weak transcription Enhancers ZNF genes & repeats Strong transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:128224000-128235600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
2	chr6:128225600-128232800	Weak transcription	Fetal Thymus	thymus
3	chr6:128230000-128233000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr6:128230000-128235600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
5	chr6:128231000-128232800	Weak transcription	Primary T cells fromperipheralblood	blood
6	chr6:128231000-128233600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
7	chr6:128231400-128233200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
8	chr6:128232000-128232400	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
9	chr6:128232200-128232800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
10	chr6:128232200-128233000	Enhancers	Primary T killer memory cells from peripheral blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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