Variant report

Variant	rs529661253
Chromosome Location	chr14:79163770-79163771
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr14:79163722-79164105	K562	blood:	n/a	chr14:79163887-79163908
2	RAD21	chr14:79163647-79164087	HepG2	liver:	n/a	chr14:79163900-79163907
3	ZNF143	chr14:79163766-79164080	GM12878	blood:	n/a	n/a
4	TCF7L2	chr14:79163662-79163951	MCF-7	breast:	n/a	chr14:79163805-79163819 chr14:79163806-79163816 chr14:79163774-79163783 chr14:79163808-79163817 chr14:79163807-79163816 chr14:79163804-79163818 chr14:79163804-79163820 chr14:79163804-79163820
5	SMC3	chr14:79163721-79164068	Hela-S3	cervix:	n/a	n/a
6	CTCF	chr14:79163768-79164026	GM12878	blood:	n/a	chr14:79163887-79163908
7	CTCF	chr14:79163754-79163986	HepG2	liver:	n/a	chr14:79163887-79163908
8	RAD21	chr14:79163724-79164083	HepG2	liver:	n/a	chr14:79163900-79163907
9	FOS	chr14:79163632-79163962	MCF10A-Er-Src	breast:	n/a	chr14:79163772-79163784 chr14:79163774-79163783 chr14:79163775-79163782 chr14:79163773-79163782 chr14:79163773-79163783 chr14:79163773-79163783
10	RAD21	chr14:79163694-79164028	H1-hESC	embryonic stem cell:	n/a	chr14:79163900-79163907
11	FOS	chr14:79163634-79163962	MCF10A-Er-Src	breast:	n/a	chr14:79163772-79163784 chr14:79163774-79163783 chr14:79163775-79163782 chr14:79163773-79163782 chr14:79163773-79163783 chr14:79163773-79163783
12	RAD21	chr14:79163659-79164066	A549	lung:	n/a	chr14:79163900-79163907
13	SMC3	chr14:79163744-79164228	SK-N-SH	brain:	n/a	n/a
14	RAD21	chr14:79163672-79164155	MCF-7	breast:	n/a	chr14:79163900-79163907
15	JUND	chr14:79163685-79163952	HepG2	liver:	n/a	chr14:79163772-79163784 chr14:79163774-79163783 chr14:79163775-79163782 chr14:79163772-79163783 chr14:79163773-79163782 chr14:79163773-79163783 chr14:79163773-79163783
16	RAD21	chr14:79163666-79164055	H1-hESC	embryonic stem cell:	n/a	chr14:79163900-79163907
17	RAD21	chr14:79163695-79164008	ECC-1	luminal epithelium:	n/a	chr14:79163900-79163907
18	RAD21	chr14:79163711-79164031	GM12878	blood:	n/a	chr14:79163900-79163907
19	SMC3	chr14:79163763-79164047	GM12878	blood:	n/a	n/a
20	RAD21	chr14:79163691-79164082	Hela-S3	cervix:	n/a	chr14:79163900-79163907
21	TCF7L2	chr14:79163717-79163989	Hela-S3	cervix:	n/a	chr14:79163805-79163819 chr14:79163806-79163816 chr14:79163774-79163783 chr14:79163808-79163817 chr14:79163807-79163816 chr14:79163804-79163818 chr14:79163804-79163820 chr14:79163804-79163820
22	RAD21	chr14:79163744-79164037	GM12878	blood:	n/a	chr14:79163900-79163907
23	CTCF	chr14:79163699-79164077	HepG2	liver:	n/a	chr14:79163887-79163908
24	RAD21	chr14:79163712-79164101	HCT-116	colon:	n/a	chr14:79163900-79163907
25	RAD21	chr14:79163515-79164297	SK-N-SH	brain:	n/a	chr14:79163900-79163907
26	CTCF	chr14:79163592-79164270	SK-N-SH	brain:	n/a	chr14:79163887-79163908
27	CTCF	chr14:79163762-79164040	HUVEC	blood vessel:	n/a	chr14:79163887-79163908
28	CTCF	chr14:79163731-79164049	MCF-7	breast:	n/a	chr14:79163887-79163908
29	CTCF	chr14:79163713-79164144	MCF-7	breast:	n/a	chr14:79163887-79163908
30	CTCF	chr14:79163760-79163910	HPAF	blood vessel:	n/a	chr14:79163887-79163908
31	TCF7L2	chr14:79163653-79164060	HEK293	kidney:	n/a	chr14:79163805-79163819 chr14:79163806-79163816 chr14:79163774-79163783 chr14:79163808-79163817 chr14:79163807-79163816 chr14:79163804-79163818 chr14:79163804-79163820 chr14:79163804-79163820
32	RAD21	chr14:79163713-79164110	IMR90	lung:	n/a	chr14:79163900-79163907
33	RAD21	chr14:79163704-79164166	MCF-7	breast:	n/a	chr14:79163900-79163907
34	RAD21	chr14:79163703-79164082	H1-hESC	embryonic stem cell:	n/a	chr14:79163900-79163907
35	CTCF	chr14:79163746-79164087	H1-hESC	embryonic stem cell:	n/a	chr14:79163887-79163908
36	RAD21	chr14:79163708-79164029	SK-N-SH_RA	brain:	n/a	chr14:79163900-79163907
37	STAT3	chr14:79163731-79163914	MCF10A-Er-Src	breast:	n/a	chr14:79163774-79163783
38	FOS	chr14:79163628-79163990	MCF10A-Er-Src	breast:	n/a	chr14:79163772-79163784 chr14:79163774-79163783 chr14:79163775-79163782 chr14:79163773-79163782 chr14:79163773-79163783 chr14:79163773-79163783
39	RAD21	chr14:79163709-79164132	HCT-116	colon:	n/a	chr14:79163900-79163907
40	CTCF	chr14:79163722-79164119	IMR90	lung:	n/a	chr14:79163887-79163908
41	CTCF	chr14:79163770-79164024	LNCaP	prostate:	n/a	chr14:79163887-79163908
42	CTCF	chr14:79163714-79164051	A549	lung:	n/a	chr14:79163887-79163908
43	CTCF	chr14:79163760-79163910	GM12864	blood:	n/a	chr14:79163887-79163908
44	STAT3	chr14:79163723-79163959	MCF10A-Er-Src	breast:	n/a	chr14:79163774-79163783
45	RCOR1	chr14:79163750-79163830	GM12878	blood:	n/a	n/a
46	CTCF	chr14:79163534-79164313	A549	lung:	n/a	chr14:79163887-79163908
47	RAD21	chr14:79163711-79164039	A549	lung:	n/a	chr14:79163900-79163907
48	FOS	chr14:79163633-79163963	MCF10A-Er-Src	breast:	n/a	chr14:79163772-79163784 chr14:79163774-79163783 chr14:79163775-79163782 chr14:79163773-79163782 chr14:79163773-79163783 chr14:79163773-79163783
49	RAD21	chr14:79163657-79163999	SK-N-SH_RA	brain:	n/a	chr14:79163900-79163907
50	CTCF	chr14:79163708-79164100	GM12878	blood:	n/a	chr14:79163887-79163908

No.	Distal block	Cell Line	Cell type
1	chr14:78488036..78488630-chr14:79163630..79164376,2	K562	blood:
2	chr14:78630320..78630924-chr14:79163432..79164245,2	MCF-7	breast:
3	chr14:79064098..79065061-chr14:79163439..79164257,3	MCF-7	breast:
4	chr14:78914156..78915026-chr14:79163475..79164182,2	MCF-7	breast:

Variant related genes	Relation type
NRXN3	TF binding region

Extended variants
information (count: 23 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:23 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2760000	chr14:78875607-79173528	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv2758363	chr14:78903610-79173528	Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv565236	chr14:79156377-79165596	Weak transcription Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
4	nsv565237	chr14:79157040-79165608	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
5	esv3530261	chr14:79159000-79165796	Enhancers Flanking Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
6	esv3530263	chr14:79159029-79165792	Weak transcription Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
7	esv3530262	chr14:79159066-79165745	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
8	esv3530264	chr14:79159066-79165745	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
9	esv13449	chr14:79159520-79165627	Weak transcription Flanking Active TSS Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
10	nsv565238	chr14:79160430-79164498	Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
11	nsv565239	chr14:79160430-79165089	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
12	nsv565240	chr14:79160430-79165596	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
13	nsv565241	chr14:79160430-79165608	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
14	nsv565242	chr14:79160430-79166221	Weak transcription Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
15	esv2421742	chr14:79160946-79165608	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
16	nsv442348	chr14:79161185-79165607	Weak transcription Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
17	nsv565243	chr14:79161542-79165608	Weak transcription Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
18	nsv517018	chr14:79161622-79165217	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
19	nsv565244	chr14:79161622-79165608	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
20	nsv524797	chr14:79161622-79167881	Weak transcription Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
21	nsv514753	chr14:79161727-79165327	Weak transcription Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
22	nsv565245	chr14:79162573-79165217	Weak transcription Enhancers	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
23	nsv565246	chr14:79162967-79165608	Weak transcription Enhancers	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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