Variant report

Variant	rs529700141
Chromosome Location	chr15:78203032-78203033
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1806097	chr15:77817889-78301377	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv529491	chr15:77932659-78751516	Genic enhancers Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
3	nsv833062	chr15:78035206-78220358	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	esv1833316	chr15:78081307-78328108	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
5	nsv904426	chr15:78090630-78264164	Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv904427	chr15:78129964-78251431	Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
7	nsv976954	chr15:78153346-78255825	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
8	nsv1046383	chr15:78153850-78229596	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
9	nsv904428	chr15:78156238-78230906	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
10	nsv904429	chr15:78160362-78251431	Active TSS Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
11	esv1827357	chr15:78200594-78206047	Active TSS Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
12	esv1823600	chr15:78200594-78219757	Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
13	esv18540	chr15:78202973-78227329	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:78180000-78215600	Weak transcription	Right Atrium	heart
2	chr15:78200400-78203200	Enhancers	Esophagus	oesophagus
3	chr15:78200400-78203200	Enhancers	Stomach Mucosa	stomach
4	chr15:78200400-78203800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr15:78202800-78203200	Active TSS	H1 Cell Line	embryonic stem cell
6	chr15:78202800-78203200	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr15:78202800-78203200	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr15:78202800-78203200	Active TSS	H9 Cell Line	embryonic stem cell
9	chr15:78202800-78203200	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr15:78202800-78203200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr15:78202800-78203200	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr15:78202800-78203200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr15:78202800-78203200	Active TSS	HUES48 Cell Line	embryonic stem cell
14	chr15:78202800-78203200	Active TSS	HUES64 Cell Line	embryonic stem cell
15	chr15:78202800-78203200	Active TSS	iPS-15b Cell Line	embryonic stem cell
16	chr15:78202800-78203200	Active TSS	iPS-18 Cell Line	embryonic stem cell
17	chr15:78202800-78203200	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr15:78202800-78203200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr15:78202800-78203200	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
20	chr15:78202800-78203200	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr15:78202800-78203200	Active TSS	Primary neutrophils fromperipheralblood	blood
22	chr15:78202800-78203200	Active TSS	Primary B cells from cord blood	blood
23	chr15:78202800-78203200	Active TSS	Primary T cells from cord blood	blood
24	chr15:78202800-78203200	Active TSS	Primary T helper naive cells from peripheral blood	blood
25	chr15:78202800-78203200	Active TSS	Primary T helper naive cells fromperipheralblood	blood
26	chr15:78202800-78203200	Active TSS	Primary T helper cells PMA-I stimulated	--
27	chr15:78202800-78203200	Active TSS	Primary T helper 17 cells PMA-I stimulated	--
28	chr15:78202800-78203200	Active TSS	Primary T helper cells fromperipheralblood	blood
29	chr15:78202800-78203200	Active TSS	Primary T regulatory cells fromperipheralblood	blood
30	chr15:78202800-78203200	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
31	chr15:78202800-78203200	Active TSS	Primary Natural Killer cells fromperipheralblood	blood
32	chr15:78202800-78203200	Active TSS	Primary T killer naive cells fromperipheralblood	blood
33	chr15:78202800-78203200	Active TSS	Primary T killer memory cells from peripheral blood	blood
34	chr15:78202800-78203200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr15:78202800-78203200	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr15:78202800-78203200	Active TSS	Muscle Satellite Cultured Cells	--
37	chr15:78202800-78203200	Active TSS	Cortex derived primary cultured neurospheres	brain
38	chr15:78202800-78203200	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr15:78202800-78203200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr15:78202800-78203200	Active TSS	Brain Angular Gyrus	brain
41	chr15:78202800-78203200	Active TSS	Brain Cingulate Gyrus	brain
42	chr15:78202800-78203200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
43	chr15:78202800-78203200	Active TSS	Duodenum Mucosa	Duodenum
44	chr15:78202800-78203200	Active TSS	Fetal Adrenal Gland	Adrenal Gland
45	chr15:78202800-78203200	Active TSS	Fetal Intestine Large	intestine
46	chr15:78202800-78203200	Active TSS	Fetal Intestine Small	intestine
47	chr15:78202800-78203200	Active TSS	Fetal Kidney	kidney
48	chr15:78202800-78203200	Active TSS	Fetal Lung	lung
49	chr15:78202800-78203200	Flanking Active TSS	Fetal Muscle Trunk	muscle
50	chr15:78202800-78203200	Flanking Active TSS	Fetal Muscle Leg	muscle

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