Variant report

Variant	rs529703963
Chromosome Location	chr3:82857328-82857329
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr3:82857285-82857335	HPAEpiC	pulmonary alveolar:	n/a
2	chr3:82857285-82857335	NH-A	brain:	n/a
3	chr3:82857285-82857335	PANC-1	pancreas:	n/a
4	chr3:82857285-82857335	HCF	heart:	n/a
5	chr3:82857285-82857335	SKMC	muscle:	n/a
6	chr3:82857285-82857335	SK-N-SH_RA	brain:	n/a
7	chr3:82857285-82857335	HCM	heart:	n/a
8	chr3:82857285-82857335	HCPEpiC	choroid plexus:	n/a
9	chr3:82857285-82857335	HCT-116	colon:	n/a
10	chr3:82857285-82857335	HEK293	kidney:	embryo
11	chr3:82857285-82857335	HRE	kidney:	n/a
12	chr3:82857285-82857335	HRCEpiC	kidney:	n/a
13	chr3:82857285-82857335	BJ	skin:	n/a
14	chr3:82857285-82857335	IMR90	lung:	fetal
15	chr3:82857285-82857335	Caco-2	colon:	n/a
16	chr3:82857285-82857335	PFSK-1	brain:	n/a
17	chr3:82857285-82857335	Jurkat	blood:	n/a
18	chr3:82857285-82857335	AG09319	gingival:	n/a
19	chr3:82857285-82857335	GM12892	blood:	n/a
20	chr3:82857285-82857335	HIPEpiC	eye:	n/a
21	chr3:82857285-82857335	HMEC	breast:	n/a
22	chr3:82857285-82857335	NHDF-neo	bronchial:	n/a
23	chr3:82857285-82857335	LNCaP	prostate:	n/a
24	chr3:82857285-82857335	NT2-D1	testis:	n/a
25	chr3:82857285-82857335	A549	lung:	n/a
26	chr3:82857285-82857335	AG04450	lung:	fetal
27	chr3:82857285-82857335	BE2_C	brain:	n/a
28	chr3:82857285-82857335	PrEC	prostate:	n/a
29	chr3:82857285-82857335	NHBE	bronchial:	n/a
30	chr3:82857285-82857335	RPTEC	kidney:	n/a
31	chr3:82857285-82857335	SK-N-MC	brain:	n/a
32	chr3:82857285-82857335	AoSMC	blood vessel:	n/a
33	chr3:82857285-82857335	H1-hESC	embryonic stem cell:	embryo
34	chr3:82857285-82857335	ECC-1	luminal epithelium:	n/a
35	chr3:82857285-82857335	AG09309	skin:	n/a
36	chr3:82857285-82857335	GM12878	blood:	n/a
37	chr3:82857285-82857335	MCF-7	breast:	n/a
38	chr3:82857285-82857335	CMK	blood:	n/a
39	chr3:82857285-82857335	HNPCEpiC	eye:	n/a
40	chr3:82857285-82857335	HUVEC	blood vessel:	n/a
41	chr3:82857285-82857335	HL-60	blood:	n/a
42	chr3:82857285-82857335	HEEpiC	esophagus:	n/a
43	chr3:82857285-82857335	HAEpiC	amniotic membrane:	n/a
44	chr3:82857285-82857335	HepG2	liver:	n/a
45	chr3:82857285-82857335	AG04449	skin:	fetal
46	chr3:82857285-82857335	GM19239	blood:	n/a
47	chr3:82857285-82857335	GM06990	blood:	n/a
48	chr3:82857285-82857335	T-47D	breast:	n/a
49	chr3:82857285-82857335	HRPEpiC	eye:	n/a
50	chr3:82857285-82857335	ovcar-3	ovarian:	n/a

No data

Variant related genes	Relation type
CYP51A1P1	CpG island

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013820	chr3:82175705-82968181	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	esv2830308	chr3:82741198-83269730	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	esv1805592	chr3:82853590-82913445	ZNF genes & repeats Enhancers Weak transcription	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
4	esv1814571	chr3:82857229-82910711	ZNF genes & repeats Enhancers Weak transcription	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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