Variant report

Variant	rs529756971
Chromosome Location	chr15:58912785-58912786
allele	-/TAAA
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051058	chr15:58519922-59092530	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv542401	chr15:58519922-59092530	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv1551	chr15:58891639-58936580	Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	nsv904269	chr15:58906145-58992591	Enhancers Strong transcription ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	esv2561717	chr15:58912293-58913920	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats	TF binding region	1 gene(s)	inside rSNPs	diseases
6	esv5828	chr15:58912625-58913296	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers	n/a	n/a	inside rSNPs	diseases
7	esv2129733	chr15:58912675-58913380	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
8	esv3501864	chr15:58912734-58913282	Strong transcription Weak transcription Genic enhancers Enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
9	esv3501861	chr15:58912742-58913265	Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Enhancers	n/a	n/a	inside rSNPs	diseases
10	esv3501862	chr15:58912777-58913206	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers	n/a	n/a	inside rSNPs	diseases
11	esv3311269	chr15:58912783-58913274	Strong transcription Weak transcription Genic enhancers Enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
12	esv3311271	chr15:58912784-58913245	Strong transcription Weak transcription ZNF genes & repeats Enhancers Genic enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:58880600-58920600	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr15:58888400-58920000	Weak transcription	Rectal Smooth Muscle	rectum
3	chr15:58889600-58919800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr15:58889800-58918800	Weak transcription	Osteobl	bone
5	chr15:58889800-58921000	Weak transcription	Ovary	ovary
6	chr15:58891400-58959600	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr15:58899200-58920200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr15:58901400-58918800	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr15:58901600-58913400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
10	chr15:58903200-58913400	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr15:58903400-58918600	Weak transcription	HUVEC	blood vessel
12	chr15:58903800-58914200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr15:58904800-58913600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
14	chr15:58905000-58920800	Weak transcription	Left Ventricle	heart
15	chr15:58905000-58983200	Weak transcription	Esophagus	oesophagus
16	chr15:58905400-58919000	Weak transcription	NHEK	skin
17	chr15:58905400-58919600	Weak transcription	Rectal Mucosa Donor 31	rectum
18	chr15:58905400-58971800	Weak transcription	Spleen	Spleen
19	chr15:58905600-58919800	Weak transcription	Stomach Mucosa	stomach
20	chr15:58905600-58976400	Weak transcription	Gastric	stomach
21	chr15:58906000-58914000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr15:58906400-58915200	Weak transcription	HSMMtube	muscle
23	chr15:58906400-58920000	Weak transcription	Colonic Mucosa	Colon
24	chr15:58906400-58923000	Weak transcription	Pancreas	Pancrea
25	chr15:58906400-58976400	Weak transcription	Small Intestine	intestine
26	chr15:58907000-58913600	Weak transcription	Fetal Kidney	kidney
27	chr15:58907000-58918800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr15:58907200-58913200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
29	chr15:58907200-58913200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
30	chr15:58907200-58913600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
31	chr15:58907200-58913600	Weak transcription	Primary T helper cells PMA-I stimulated	--
32	chr15:58907200-58913600	Weak transcription	K562	blood
33	chr15:58907200-58913800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
34	chr15:58907200-58914800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
35	chr15:58907200-58914800	Strong transcription	Monocytes-CD14+_RO01746	blood
36	chr15:58907200-58915000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
37	chr15:58907200-58918800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
38	chr15:58907200-58918800	Weak transcription	Skeletal Muscle Female	skeletal muscle
39	chr15:58907200-58919200	Weak transcription	HepG2	liver
40	chr15:58907200-58919200	Weak transcription	NHLF	lung
41	chr15:58907200-58919400	Weak transcription	Brain Cingulate Gyrus	brain
42	chr15:58907200-58919400	Weak transcription	Colon Smooth Muscle	Colon
43	chr15:58907200-58920000	Weak transcription	Brain Inferior Temporal Lobe	brain
44	chr15:58907200-58920600	Weak transcription	Stomach Smooth Muscle	stomach
45	chr15:58907200-58920800	Weak transcription	NH-A	brain
46	chr15:58907400-58916200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
47	chr15:58907400-58920800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
48	chr15:58907800-58913000	Weak transcription	HUES64 Cell Line	embryonic stem cell
49	chr15:58907800-58914200	Strong transcription	Primary B cells from cord blood	blood
50	chr15:58907800-58952000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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