Variant report

Variant	rs529759330
Chromosome Location	chr3:134674216-134674217
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:23 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009634	chr3:134543259-134820208	Weak transcription Enhancers Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv536720	chr3:134543259-134820208	Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1000277	chr3:134546080-134970837	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv513075	chr3:134671776-134674683	Weak transcription Enhancers Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv3462547	chr3:134673330-134674936	Weak transcription Enhancers Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv3504682	chr3:134673369-134675033	Weak transcription Enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv2490314	chr3:134673390-134675383	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv2309200	chr3:134673734-134674754	Weak transcription Enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
9	esv3403927	chr3:134673794-134674659	Weak transcription ZNF genes & repeats Enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
10	esv3504683	chr3:134673819-134674665	Weak transcription Strong transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
11	esv3504687	chr3:134673830-134674592	Weak transcription Enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
12	esv3462544	chr3:134673836-134674625	Weak transcription Strong transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
13	esv3504689	chr3:134673845-134674665	Weak transcription Strong transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
14	esv3504688	chr3:134673847-134674608	Strong transcription Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
15	esv3462546	chr3:134673850-134674583	Weak transcription Strong transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
16	esv3504684	chr3:134673859-134674599	Weak transcription Enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
17	esv3402672	chr3:134673867-134674578	Weak transcription Strong transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
18	esv3338412	chr3:134673878-134674622	Weak transcription Enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
19	esv3462545	chr3:134673887-134674563	Weak transcription Strong transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
20	esv3504686	chr3:134673902-134674556	Weak transcription Enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
21	esv3462548	chr3:134673903-134674570	Weak transcription Strong transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
22	esv3504690	chr3:134673903-134674570	Weak transcription Strong transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
23	esv991539	chr3:134673905-134674557	Weak transcription Strong transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:134665000-134676800	Weak transcription	Psoas Muscle	Psoas
2	chr3:134671000-134674800	Weak transcription	Brain Hippocampus Middle	brain
3	chr3:134671000-134674800	Weak transcription	Right Ventricle	heart
4	chr3:134671000-134675000	Weak transcription	Fetal Muscle Leg	muscle
5	chr3:134671000-134676600	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr3:134671000-134677600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr3:134671000-134677600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr3:134671000-134679400	Weak transcription	Spleen	Spleen
9	chr3:134671000-134682800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr3:134671000-134684600	Weak transcription	Brain Germinal Matrix	brain
11	chr3:134671000-134693400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
12	chr3:134671000-134697400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr3:134671400-134684400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr3:134672400-134676800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr3:134672400-134677000	Weak transcription	Brain Anterior Caudate	brain
16	chr3:134673000-134675200	Enhancers	GM12878-XiMat	blood
17	chr3:134673200-134674800	Weak transcription	Fetal Brain Female	brain
18	chr3:134673800-134684600	Weak transcription	Brain Cingulate Gyrus	brain

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