Variant report

Variant	rs529770891
Chromosome Location	chr12:33048966-33048967
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:33047763..33049269-chr12:33060696..33063050,2	MCF-7	breast:
2	chr12:32908157..32910268-chr12:33048253..33050625,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000139131	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530421	chr12:32825335-33465991	Strong transcription Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv1054440	chr12:32872999-33150460	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv1035900	chr12:33010643-33079667	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv541458	chr12:33010643-33079667	Strong transcription Active TSS Genic enhancers Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
5	esv3436441	chr12:33048510-33051058	Bivalent/Poised TSS Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription	TF binding region CpG island Chromatin interactive region	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:33044600-33049200	Active TSS	Right Ventricle	heart
2	chr12:33044600-33050600	Active TSS	Right Atrium	heart
3	chr12:33045400-33051000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr12:33046800-33050600	Active TSS	Pancreatic Islets	Pancreatic Islet
5	chr12:33047000-33050200	Active TSS	Duodenum Mucosa	Duodenum
6	chr12:33047200-33050400	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr12:33047200-33050400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr12:33047400-33050000	Active TSS	Stomach Smooth Muscle	stomach
9	chr12:33047400-33050200	Active TSS	Stomach Mucosa	stomach
10	chr12:33047600-33049600	Bivalent/Poised TSS	Rectal Mucosa Donor 29	rectum
11	chr12:33047600-33050200	Active TSS	Fetal Heart	heart
12	chr12:33047800-33050200	Active TSS	HMEC	breast
13	chr12:33047800-33050400	Active TSS	ES-I3 Cell Line	embryonic stem cell
14	chr12:33047800-33050600	Active TSS	Placenta Amnion	Placenta Amnion
15	chr12:33048200-33049000	Bivalent/Poised TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr12:33048200-33049000	Bivalent/Poised TSS	Brain Hippocampus Middle	brain
17	chr12:33048200-33049200	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
18	chr12:33048200-33049600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr12:33048200-33050600	Active TSS	Ovary	ovary
20	chr12:33048200-33051200	Active TSS	H9 Cell Line	embryonic stem cell
21	chr12:33048400-33049000	Flanking Bivalent TSS/Enh	HUES48 Cell Line	embryonic stem cell
22	chr12:33048400-33049000	Flanking Active TSS	Liver	Liver
23	chr12:33048400-33049000	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
24	chr12:33048400-33049000	Flanking Bivalent TSS/Enh	Skeletal Muscle Female	skeletal muscle
25	chr12:33048400-33049000	Bivalent/Poised TSS	Small Intestine	intestine
26	chr12:33048400-33049200	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr12:33048400-33049200	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
28	chr12:33048400-33049200	Bivalent Enhancer	Primary hematopoietic stem cells short term culture	blood
29	chr12:33048400-33049200	Bivalent Enhancer	Primary T helper naive cells fromperipheralblood	blood
30	chr12:33048400-33049200	Bivalent/Poised TSS	Brain Cingulate Gyrus	brain
31	chr12:33048400-33049200	Bivalent/Poised TSS	Brain Inferior Temporal Lobe	brain
32	chr12:33048400-33049200	Bivalent/Poised TSS	Brain Dorsolateral Prefrontal Cortex	brain
33	chr12:33048400-33049200	Flanking Active TSS	Hela-S3	cervix
34	chr12:33048400-33049400	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
35	chr12:33048400-33049400	Flanking Active TSS	Primary hematopoietic stem cells	blood
36	chr12:33048400-33049400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr12:33048400-33049400	Flanking Bivalent TSS/Enh	Monocytes-CD14+_RO01746	blood
38	chr12:33048400-33050000	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr12:33048400-33050000	Active TSS	Sigmoid Colon	Sigmoid Colon
40	chr12:33048400-33050200	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
41	chr12:33048400-33050200	Bivalent/Poised TSS	Rectal Smooth Muscle	rectum
42	chr12:33048400-33050400	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
43	chr12:33048400-33050400	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
44	chr12:33048400-33050400	Active TSS	Fetal Intestine Small	intestine
45	chr12:33048400-33050600	Active TSS	Fetal Kidney	kidney
46	chr12:33048400-33050600	Bivalent/Poised TSS	Thymus	Thymus
47	chr12:33048400-33051000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
48	chr12:33048600-33049000	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
49	chr12:33048600-33049000	Bivalent Enhancer	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr12:33048600-33049000	Flanking Bivalent TSS/Enh	Brain Angular Gyrus	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links