Variant report

Variant	rs529792617
Chromosome Location	chr17:17088683-17088684
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr17:17088672-17088769	Lung_OC	lung:	n/a	n/a
2	POLR2A	chr17:17088457-17088797	H1-hESC	embryonic stem cell:	n/a	n/a

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-C17orf84-1	chr17:17087243-17091977	predAs_engstrom06_CD171782_1

Variant related genes	Relation type
MPRIP	TF binding region

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv907728	chr17:17013189-17095487	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv833380	chr17:17088416-17241206	Strong transcription Flanking Active TSS Weak transcription Enhancers Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	nsv962272	chr17:17088447-17089152	Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:17030400-17089200	Strong transcription	Fetal Intestine Large	intestine
2	chr17:17038400-17093800	Strong transcription	Fetal Brain Female	brain
3	chr17:17045200-17093800	Strong transcription	Fetal Stomach	stomach
4	chr17:17051000-17093200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr17:17055200-17089400	Strong transcription	Rectal Mucosa Donor 31	rectum
6	chr17:17055600-17092600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr17:17055800-17092600	Strong transcription	Cortex derived primary cultured neurospheres	brain
8	chr17:17056000-17093600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
9	chr17:17056200-17092400	Strong transcription	Stomach Smooth Muscle	stomach
10	chr17:17056600-17093600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr17:17056800-17095000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr17:17059400-17089000	Strong transcription	A549	lung
13	chr17:17060400-17093400	Strong transcription	Liver	Liver
14	chr17:17060600-17088800	Strong transcription	Fetal Intestine Small	intestine
15	chr17:17060600-17089200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr17:17060800-17089000	Strong transcription	NHLF	lung
17	chr17:17060800-17089400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr17:17060800-17093600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr17:17061400-17089000	Strong transcription	Osteobl	bone
20	chr17:17061400-17090200	Strong transcription	Muscle Satellite Cultured Cells	--
21	chr17:17067800-17092200	Strong transcription	Brain Cingulate Gyrus	brain
22	chr17:17075200-17089000	Strong transcription	Brain Angular Gyrus	brain
23	chr17:17076200-17089000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr17:17076200-17092600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr17:17076200-17094600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
26	chr17:17076600-17104600	Weak transcription	K562	blood
27	chr17:17080800-17090800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
28	chr17:17082800-17089600	Genic enhancers	Primary B cells from peripheral blood	blood
29	chr17:17082800-17091000	Genic enhancers	Fetal Thymus	thymus
30	chr17:17083400-17090800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
31	chr17:17083600-17093200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
32	chr17:17083800-17088800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr17:17084200-17092400	Strong transcription	Brain Inferior Temporal Lobe	brain
34	chr17:17084400-17088800	Weak transcription	Stomach Mucosa	stomach
35	chr17:17084400-17093400	Weak transcription	Pancreatic Islets	Pancreatic Islet
36	chr17:17084400-17095200	Weak transcription	Fetal Kidney	kidney
37	chr17:17084800-17089000	Weak transcription	Small Intestine	intestine
38	chr17:17084800-17091400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
39	chr17:17084800-17094800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr17:17084800-17094800	Weak transcription	Fetal Brain Male	brain
41	chr17:17085600-17089200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr17:17085600-17094800	Weak transcription	H1 Cell Line	embryonic stem cell
43	chr17:17085800-17088800	Strong transcription	Aorta	Aorta
44	chr17:17085800-17089200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr17:17085800-17090800	Weak transcription	Primary hematopoietic stem cells	blood
46	chr17:17086000-17090200	Enhancers	Primary T helper naive cells from peripheral blood	blood
47	chr17:17086000-17090200	Enhancers	Primary T helper cells fromperipheralblood	blood
48	chr17:17086000-17090600	Enhancers	Primary T helper cells PMA-I stimulated	--
49	chr17:17086200-17089400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
50	chr17:17086200-17090000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood

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