Variant report

Variant	rs529806120
Chromosome Location	chr14:22103359-22103360
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr14:22103310-22103360	HL-60	blood:	n/a
2	chr14:22103310-22103360	A549	lung:	n/a
3	chr14:22103310-22103360	HRE	kidney:	n/a
4	chr14:22103310-22103360	HRPEpiC	eye:	n/a
5	chr14:22103310-22103360	GM12892	blood:	n/a
6	chr14:22103310-22103360	Hepatocyte	liver:	n/a
7	chr14:22103310-22103360	SAEC	small airway:	n/a
8	chr14:22103310-22103360	NT2-D1	testis:	n/a
9	chr14:22103310-22103360	K562	blood:	n/a
10	chr14:22103310-22103360	ECC-1	luminal epithelium:	n/a
11	chr14:22103310-22103360	MCF-7	breast:	n/a
12	chr14:22103310-22103360	HEEpiC	esophagus:	n/a
13	chr14:22103310-22103360	NB4	blood:	n/a
14	chr14:22103310-22103360	SK-N-SH_RA	brain:	n/a
15	chr14:22103310-22103360	ProgFib	skin:	n/a
16	chr14:22103310-22103360	SK-N-MC	brain:	n/a
17	chr14:22103310-22103360	HCT-116	colon:	n/a
18	chr14:22103310-22103360	T-47D	breast:	n/a
19	chr14:22103310-22103360	AG04450	lung:	fetal
20	chr14:22103310-22103360	HCF	heart:	n/a
21	chr14:22103310-22103360	HIPEpiC	eye:	n/a
22	chr14:22103310-22103360	AoSMC	blood vessel:	n/a
23	chr14:22103310-22103360	LNCaP	prostate:	n/a
24	chr14:22103310-22103360	HEK293	kidney:	embryo
25	chr14:22103310-22103360	Jurkat	blood:	n/a
26	chr14:22103310-22103360	GM12878	blood:	n/a
27	chr14:22103310-22103360	NHDF-neo	bronchial:	n/a
28	chr14:22103310-22103360	HMEC	breast:	n/a
29	chr14:22103310-22103360	AG09319	gingival:	n/a
30	chr14:22103310-22103360	GM06990	blood:	n/a
31	chr14:22103310-22103360	CMK	blood:	n/a
32	chr14:22103310-22103360	IMR90	lung:	fetal
33	chr14:22103310-22103360	HPAEpiC	pulmonary alveolar:	n/a
34	chr14:22103310-22103360	Caco-2	colon:	n/a
35	chr14:22103310-22103360	AG04449	skin:	fetal
36	chr14:22103310-22103360	Hela-S3	cervix:	n/a
37	chr14:22103310-22103360	SKMC	muscle:	n/a
38	chr14:22103310-22103360	HCPEpiC	choroid plexus:	n/a
39	chr14:22103310-22103360	HRCEpiC	kidney:	n/a
40	chr14:22103310-22103360	PFSK-1	brain:	n/a
41	chr14:22103310-22103360	HUVEC	blood vessel:	n/a
42	chr14:22103310-22103360	AG10803	skin:	n/a
43	chr14:22103310-22103360	HAEpiC	amniotic membrane:	n/a
44	chr14:22103310-22103360	HNPCEpiC	eye:	n/a
45	chr14:22103310-22103360	HepG2	liver:	n/a
46	chr14:22103310-22103360	GM12891	blood:	n/a
47	chr14:22103310-22103360	GM19239	blood:	n/a
48	chr14:22103310-22103360	U87	brain:	n/a
49	chr14:22103310-22103360	ovcar-3	ovarian:	n/a
50	chr14:22103310-22103360	BE2_C	brain:	n/a

No data

Variant related genes	Relation type
OR10G2	CpG island

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530769	chr14:21407536-22139126	Bivalent/Poised TSS Bivalent Enhancer Strong transcription Active TSS Weak transcription Enhancers Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	117 gene(s)	inside rSNPs	diseases
2	esv2422459	chr14:21931624-22169502	Genic enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
3	nsv1042309	chr14:22042511-22866936	Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	90 gene(s)	inside rSNPs	diseases
4	nsv456147	chr14:22073473-22305071	Enhancers Bivalent Enhancer Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
5	nsv563851	chr14:22073473-22305071	Active TSS Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
6	nsv901479	chr14:22102800-22146832	Enhancers Bivalent Enhancer Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links