Variant report

Variant	rs529865729
Chromosome Location	chr6:119669591-119669592
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:119467858..119470789-chr6:119668770..119672252,3	K562	blood:
2	chr6:119646382..119648660-chr6:119668105..119670795,4	K562	blood:
3	chr6:119669555..119672250-chr9:133998872..134001645,2	MCF-7	breast:
4	chr6:119668823..119671516-chr8:145162966..145165568,2	MCF-7	breast:
5	chr6:119646815..119653075-chr6:119668578..119671016,6	K562	blood:
6	chr6:119668779..119670859-chr6:120052634..120055044,2	MCF-7	breast:
7	chr6:119398174..119401168-chr6:119668507..119671059,2	K562	blood:
8	chr6:119460572..119463135-chr6:119668179..119670876,2	K562	blood:
9	chr6:119658599..119660724-chr6:119666324..119670101,4	K562	blood:

No data

Variant related genes	Relation type
ENSG00000179526	Chromatin interaction
ENSG00000179698	Chromatin interaction
ENSG00000126883	Chromatin interaction
ENSG00000111879	Chromatin interaction
ENSG00000200732	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025995	chr6:119407742-119709548	Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	esv3447598	chr6:119558591-120119384	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	esv3389526	chr6:119558598-120190087	ZNF genes & repeats Enhancers Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
4	esv1802628	chr6:119647135-119678881	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	esv3392935	chr6:119668878-119671426	Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:119664800-119672400	Active TSS	Brain Anterior Caudate	brain
2	chr6:119665200-119672800	Active TSS	Pancreatic Islets	Pancreatic Islet
3	chr6:119666200-119672600	Active TSS	NHDF-Ad	bronchial
4	chr6:119666600-119672400	Active TSS	Duodenum Smooth Muscle	Duodenum
5	chr6:119667000-119672400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr6:119667000-119672400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
7	chr6:119667000-119672800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr6:119667200-119672200	Active TSS	Brain Inferior Temporal Lobe	brain
9	chr6:119667200-119672400	Active TSS	Right Atrium	heart
10	chr6:119667400-119670400	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr6:119667400-119670400	Active TSS	Placenta	Placenta
12	chr6:119667400-119670600	Flanking Active TSS	Primary B cells from cord blood	blood
13	chr6:119667600-119669600	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
14	chr6:119667600-119669600	Flanking Active TSS	Muscle Satellite Cultured Cells	--
15	chr6:119667600-119669800	Flanking Active TSS	NHEK	skin
16	chr6:119667600-119670000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
17	chr6:119667600-119670200	Active TSS	Fetal Brain Male	brain
18	chr6:119667600-119670400	Active TSS	Brain Hippocampus Middle	brain
19	chr6:119667600-119672000	Active TSS	Lung	lung
20	chr6:119667600-119672000	Active TSS	Pancreas	Pancrea
21	chr6:119667600-119672200	Active TSS	Brain Angular Gyrus	brain
22	chr6:119667600-119672200	Active TSS	Left Ventricle	heart
23	chr6:119667600-119672200	Active TSS	Rectal Smooth Muscle	rectum
24	chr6:119667800-119669600	Bivalent/Poised TSS	HepG2	liver
25	chr6:119667800-119670000	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
26	chr6:119667800-119672200	Active TSS	Right Ventricle	heart
27	chr6:119668000-119669600	Flanking Active TSS	Primary B cells from peripheral blood	blood
28	chr6:119668000-119669600	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
29	chr6:119668000-119669800	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
30	chr6:119668000-119669800	Flanking Active TSS	Primary hematopoietic stem cells	blood
31	chr6:119668000-119671600	Active TSS	Liver	Liver
32	chr6:119668000-119672000	Active TSS	Gastric	stomach
33	chr6:119668000-119672200	Active TSS	Psoas Muscle	Psoas
34	chr6:119668200-119669600	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
35	chr6:119668200-119669600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr6:119668200-119669600	Flanking Active TSS	Fetal Lung	lung
37	chr6:119668200-119669800	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
38	chr6:119668200-119672000	Active TSS	Aorta	Aorta
39	chr6:119668200-119672000	Active TSS	Fetal Intestine Large	intestine
40	chr6:119668200-119672200	Active TSS	Fetal Intestine Small	intestine
41	chr6:119668200-119672600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr6:119668200-119672600	Active TSS	Rectal Mucosa Donor 29	rectum
43	chr6:119668400-119669600	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
44	chr6:119668400-119669800	Flanking Active TSS	Fetal Thymus	thymus
45	chr6:119668400-119670200	Active TSS	Primary T helper 17 cells PMA-I stimulated	--
46	chr6:119668400-119671800	Active TSS	Sigmoid Colon	Sigmoid Colon
47	chr6:119668400-119672000	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
48	chr6:119668400-119672200	Active TSS	Colon Smooth Muscle	Colon
49	chr6:119668400-119672200	Active TSS	Stomach Mucosa	stomach
50	chr6:119668600-119669600	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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