Variant report

Variant	rs529884642
Chromosome Location	chr11:65123601-65123602
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:15)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:15 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:65123191..65124692-chr11:65148640..65151111,2	K562	blood:
2	chr11:65099781..65103974-chr11:65120675..65126515,7	MCF-7	breast:
3	chr11:65101225..65104158-chr11:65123210..65125603,2	K562	blood:
4	chr11:65110991..65113816-chr11:65120865..65125095,4	MCF-7	breast:
5	chr11:65122441..65125170-chr11:69458785..69461711,2	MCF-7	breast:
6	chr11:65123264..65125729-chr11:65322609..65324877,2	K562	blood:
7	chr11:65084600..65086404-chr11:65120200..65124254,3	MCF-7	breast:
8	chr11:65119888..65122132-chr11:65123050..65125503,3	K562	blood:
9	chr11:65116402..65157784-chr11:65261420..65278410,154	K562	blood:
10	chr11:65122004..65123879-chr11:65220475..65223059,2	K562	blood:
11	chr11:65088058..65090877-chr11:65123140..65125273,2	K562	blood:
12	chr11:65121664..65123613-chr11:65147869..65150112,2	MCF-7	breast:
13	chr11:65099718..65102956-chr11:65121267..65125924,4	MCF-7	breast:
14	chr11:65122594..65124302-chr11:65342369..65344295,2	MCF-7	breast:
15	chr11:65122241..65124654-chr11:65375609..65378209,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000133884	Chromatin interaction
ENSG00000162241	Chromatin interaction
ENSG00000251562	Chromatin interaction
ENSG00000173327	Chromatin interaction
ENSG00000173727	Chromatin interaction
ENSG00000270117	Chromatin interaction
ENSG00000173442	Chromatin interaction
ENSG00000149798	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526181	chr11:64638041-65257329	Flanking Active TSS Enhancers Strong transcription Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1539 gene(s)	inside rSNPs	diseases
2	nsv832190	chr11:64978144-65127613	Flanking Active TSS Weak transcription Enhancers Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
3	esv2422285	chr11:65013294-65254540	Genic enhancers Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	474 gene(s)	inside rSNPs	diseases
4	nsv897715	chr11:65083491-65427346	Enhancers Genic enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	984 gene(s)	inside rSNPs	diseases
5	nsv897716	chr11:65083491-65481166	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	999 gene(s)	inside rSNPs	diseases
6	nsv541065	chr11:65117387-65271894	Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Transcr. at gene 5' and 3' Enhancers Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	835 gene(s)	inside rSNPs	diseases
7	nsv482159	chr11:65122282-65125082	Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:84 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:65122400-65124400	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
2	chr11:65122600-65123800	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
3	chr11:65122600-65123800	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
4	chr11:65122600-65124000	Enhancers	Spleen	Spleen
5	chr11:65122800-65123800	Bivalent Enhancer	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr11:65122800-65123800	Enhancers	Gastric	stomach
7	chr11:65122800-65123800	Enhancers	Lung	lung
8	chr11:65123000-65123800	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
9	chr11:65123000-65123800	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
10	chr11:65123000-65123800	Flanking Bivalent TSS/Enh	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr11:65123000-65123800	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
12	chr11:65123000-65123800	Flanking Bivalent TSS/Enh	Muscle Satellite Cultured Cells	--
13	chr11:65123000-65123800	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr11:65123000-65123800	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr11:65123000-65123800	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr11:65123000-65123800	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
17	chr11:65123000-65123800	Flanking Bivalent TSS/Enh	Osteobl	bone
18	chr11:65123000-65124000	Flanking Active TSS	Brain Germinal Matrix	brain
19	chr11:65123000-65124600	Flanking Bivalent TSS/Enh	Skeletal Muscle Male	skeletal muscle
20	chr11:65123200-65124000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
21	chr11:65123200-65124000	Bivalent/Poised TSS	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr11:65123200-65124000	Enhancers	Fetal Brain Male	brain
23	chr11:65123200-65124400	Enhancers	Psoas Muscle	Psoas
24	chr11:65123200-65125200	Weak transcription	A549	lung
25	chr11:65123400-65123800	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
26	chr11:65123400-65123800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
27	chr11:65123400-65123800	Flanking Bivalent TSS/Enh	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr11:65123400-65123800	Bivalent/Poised TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr11:65123400-65123800	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
30	chr11:65123400-65123800	Enhancers	Primary B cells from peripheral blood	blood
31	chr11:65123400-65123800	Enhancers	Primary hematopoietic stem cells short term culture	blood
32	chr11:65123400-65123800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
33	chr11:65123400-65123800	Enhancers	Brain Cingulate Gyrus	brain
34	chr11:65123400-65123800	Flanking Bivalent TSS/Enh	Colonic Mucosa	Colon
35	chr11:65123400-65123800	Enhancers	Esophagus	oesophagus
36	chr11:65123400-65123800	Bivalent Enhancer	Stomach Mucosa	stomach
37	chr11:65123400-65123800	Flanking Bivalent TSS/Enh	Stomach Smooth Muscle	stomach
38	chr11:65123400-65123800	Bivalent Enhancer	NHLF	lung
39	chr11:65123400-65124000	Flanking Active TSS	Fetal Brain Female	brain
40	chr11:65123400-65124000	Bivalent Enhancer	Fetal Thymus	thymus
41	chr11:65123400-65124000	Enhancers	Pancreas	Pancrea
42	chr11:65123400-65124000	Bivalent Enhancer	Rectal Mucosa Donor 31	rectum
43	chr11:65123400-65124200	Enhancers	Brain Angular Gyrus	brain
44	chr11:65123400-65124600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr11:65123400-65124600	Enhancers	Left Ventricle	heart
46	chr11:65123400-65124800	Enhancers	Duodenum Mucosa	Duodenum
47	chr11:65123400-65131200	Weak transcription	Cortex derived primary cultured neurospheres	brain
48	chr11:65123400-65143600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
49	chr11:65123600-65123800	Bivalent Enhancer	Primary neutrophils fromperipheralblood	blood
50	chr11:65123600-65123800	Enhancers	Primary T cells fromperipheralblood	blood

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