Variant report

Variant	rs529962791
Chromosome Location	chr18:9617492-9617493
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr18:9616424..9618415-chr18:9912586..9915951,3	MCF-7	breast:
2	chr18:9596087..9600746-chr18:9613522..9617540,6	MCF-7	breast:
3	chr18:9615456..9617526-chr18:9895448..9898198,2	K562	blood:

Variant related genes	Relation type
ENSG00000154845	Chromatin interaction
ENSG00000272799	Chromatin interaction
ENSG00000101558	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3693417	chr18:9512985-9693638	Genic enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv458024	chr18:9558240-9828448	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
3	nsv576448	chr18:9558240-9828448	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
4	esv1820504	chr18:9614250-9621841	Weak transcription Flanking Active TSS Active TSS Enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
5	esv1801741	chr18:9614451-9621841	Enhancers Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
6	nsv521175	chr18:9615851-9623052	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:9615400-9618200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr18:9615600-9617600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr18:9615600-9617600	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr18:9615600-9619200	Weak transcription	GM12878-XiMat	blood
5	chr18:9615800-9617600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr18:9615800-9617600	Enhancers	Muscle Satellite Cultured Cells	--
7	chr18:9615800-9617600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr18:9615800-9617600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr18:9615800-9617600	Enhancers	NHEK	skin
10	chr18:9615800-9619200	Weak transcription	Brain Angular Gyrus	brain
11	chr18:9615800-9619200	Weak transcription	Brain Anterior Caudate	brain
12	chr18:9615800-9619200	Weak transcription	Duodenum Mucosa	Duodenum
13	chr18:9615800-9619200	Weak transcription	Esophagus	oesophagus
14	chr18:9615800-9619200	Enhancers	HUVEC	blood vessel
15	chr18:9615800-9619400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr18:9615800-9619400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
17	chr18:9615800-9619600	Weak transcription	Fetal Lung	lung
18	chr18:9615800-9619800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
19	chr18:9615800-9625200	Weak transcription	Placenta	Placenta
20	chr18:9615800-9625400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr18:9615800-9627400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
22	chr18:9616000-9617600	Enhancers	Brain Cingulate Gyrus	brain
23	chr18:9616000-9618800	Weak transcription	Cortex derived primary cultured neurospheres	brain
24	chr18:9616000-9619200	Weak transcription	HUES48 Cell Line	embryonic stem cell
25	chr18:9616000-9619200	Weak transcription	Stomach Mucosa	stomach
26	chr18:9616000-9619200	Weak transcription	Monocytes-CD14+_RO01746	blood
27	chr18:9616000-9619800	Weak transcription	Brain Hippocampus Middle	brain
28	chr18:9616200-9619000	Weak transcription	HSMMtube	muscle
29	chr18:9616200-9619200	Weak transcription	HUES64 Cell Line	embryonic stem cell
30	chr18:9616200-9619200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
31	chr18:9616200-9619200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr18:9616200-9619400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr18:9616200-9619400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
34	chr18:9616200-9619600	Weak transcription	Primary neutrophils fromperipheralblood	blood
35	chr18:9616400-9617600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr18:9616400-9617800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr18:9616800-9617600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr18:9616800-9619400	Weak transcription	HUES6 Cell Line	embryonic stem cell
39	chr18:9617000-9617600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
40	chr18:9617000-9617600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
41	chr18:9617000-9619200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
42	chr18:9617000-9619200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr18:9617200-9617600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
44	chr18:9617200-9618800	Weak transcription	Primary monocytes fromperipheralblood	blood
45	chr18:9617200-9619200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr18:9617200-9619400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr18:9617400-9617600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr18:9617400-9619000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr18:9617400-9619000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr18:9617400-9619000	Weak transcription	NH-A	brain

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