Variant report

Variant	rs529977525
Chromosome Location	chr7:66350078-66350079
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-KCTD7-2	chr7:66350046-66350233	NONHSAT121239

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026559	chr7:65617368-66370805	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	116 gene(s)	inside rSNPs	diseases
2	nsv888329	chr7:66234585-66376095	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv981514	chr7:66310139-66366240	Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv967329	chr7:66349389-66353665	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:101 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:66311000-66358400	Weak transcription	Brain Anterior Caudate	brain
2	chr7:66311000-66368000	Weak transcription	Colon Smooth Muscle	Colon
3	chr7:66311000-66385200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr7:66311200-66385200	Weak transcription	Brain Angular Gyrus	brain
5	chr7:66317200-66364400	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr7:66319400-66364800	Weak transcription	Primary T helper cells fromperipheralblood	blood
7	chr7:66321200-66367800	Weak transcription	Aorta	Aorta
8	chr7:66322400-66364200	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr7:66324400-66363800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr7:66325200-66360200	Weak transcription	Psoas Muscle	Psoas
11	chr7:66325200-66366400	Weak transcription	Primary hematopoietic stem cells	blood
12	chr7:66325400-66351200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr7:66325400-66366400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr7:66325400-66369400	Weak transcription	Fetal Brain Female	brain
15	chr7:66325600-66359000	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr7:66325600-66363600	Weak transcription	Primary B cells from cord blood	blood
17	chr7:66325600-66363600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
18	chr7:66325600-66373000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
19	chr7:66325800-66352800	Weak transcription	Primary T helper cells PMA-I stimulated	--
20	chr7:66325800-66359600	Weak transcription	Spleen	Spleen
21	chr7:66325800-66363400	Weak transcription	Primary B cells from peripheral blood	blood
22	chr7:66325800-66363400	Weak transcription	Brain Substantia Nigra	brain
23	chr7:66325800-66365800	Weak transcription	Esophagus	oesophagus
24	chr7:66325800-66366400	Weak transcription	Right Ventricle	heart
25	chr7:66325800-66367000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr7:66325800-66367600	Weak transcription	Primary T cells fromperipheralblood	blood
27	chr7:66326000-66362000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr7:66326000-66363600	Weak transcription	Gastric	stomach
29	chr7:66326400-66358200	Weak transcription	Fetal Muscle Trunk	muscle
30	chr7:66326400-66362600	Weak transcription	Brain Hippocampus Middle	brain
31	chr7:66326400-66363000	Weak transcription	Lung	lung
32	chr7:66326400-66368200	Weak transcription	Rectal Smooth Muscle	rectum
33	chr7:66326400-66371800	Weak transcription	Brain Cingulate Gyrus	brain
34	chr7:66326600-66363000	Weak transcription	Fetal Stomach	stomach
35	chr7:66328200-66367000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
36	chr7:66329600-66362000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr7:66329800-66372000	Weak transcription	Stomach Smooth Muscle	stomach
38	chr7:66330400-66366000	Weak transcription	Fetal Thymus	thymus
39	chr7:66331200-66353800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
40	chr7:66331800-66378400	Weak transcription	A549	lung
41	chr7:66333000-66371600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr7:66333400-66353800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
43	chr7:66333800-66364000	Weak transcription	H9 Cell Line	embryonic stem cell
44	chr7:66333800-66371800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
45	chr7:66334200-66367600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
46	chr7:66335000-66361800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
47	chr7:66335000-66363800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
48	chr7:66335400-66371400	Weak transcription	H1 Cell Line	embryonic stem cell
49	chr7:66335600-66361400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr7:66335600-66363800	Weak transcription	Adipose Nuclei	Adipose

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