The 2.0 version of rSNPBase
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Variant report
Variant
rs529985370
Chromosome Location
chr6:132885710-132885711
allele
A/G
Outlinks
Ensembl
 
UCSC
Chromatin state
Related regulatory elements
Target genes
Other information
TF binding region (count:0)
CpG islands (count:0)
Chromatin interactive region (count:1)
LncRNA region (count:0)
Mature miRNA region (count: 0)
miRNA target sites (count:0)
No data
No data
(count:1 , 50 per page) page:
1
No.
Distal block
Cell Line
Cell type
Cell Stage
1
chr6:132879343..132882169-chr6:132883230..132885783,2
K562
blood:
No data
No data
No data
Variant related genes
Relation type
ENSG00000235998
Chromatin interaction
Extended variants information (count: 2 )
Associated traits (count: 0)
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
No.
Variant name
Chromosome position
Chromatin state
Related regulatory elements
Target genes
Extended variants
Associated traits
1
nsv532069
chr6:132776411-133462292
Active TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS
TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site
90 gene(s)
inside rSNPs
diseases
2
esv3433356
chr6:132885109-132887107
Inactive region
TF binding regionChromatin interactive region
2 gene(s)
inside rSNPs
n/a
No data
Chromatin state (count:0 , 50 per page) page:
No data
Quick Search:
Input of quick search could be:
dbSNP/dbVar ID:
rs12345
/
nsv7879
a single nucleotide as 0-based coordinates:
chr1:12345
chromosomal regions:
chr1:12345-34567
what's new
New variant types
New dimension of annotation
New regulatory manner
More detailed annotation on variant overlapped TFBS
More extended data
New search manner
Quick links