Variant report

Variant	rs530043612
Chromosome Location	chr8:95365545-95365546
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831401	chr8:95218297-95393968	Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers Strong transcription Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1017301	chr8:95273503-96248352	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
3	nsv539680	chr8:95273503-96248352	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
4	nsv532338	chr8:95296118-95971825	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
5	nsv971683	chr8:95364853-95368851	Weak transcription Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:95360800-95365600	Weak transcription	A549	lung
2	chr8:95363000-95385200	Weak transcription	Primary T cells from cord blood	blood
3	chr8:95364200-95369000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr8:95364200-95369400	Weak transcription	NHDF-Ad	bronchial
5	chr8:95364800-95365800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr8:95364800-95365800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr8:95364800-95365800	Enhancers	HMEC	breast
8	chr8:95364800-95366000	Enhancers	Fetal Intestine Large	intestine
9	chr8:95364800-95366000	Enhancers	Fetal Intestine Small	intestine
10	chr8:95365000-95365800	Enhancers	NHEK	skin
11	chr8:95365000-95366000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr8:95365200-95365800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr8:95365200-95366000	Enhancers	Muscle Satellite Cultured Cells	--
14	chr8:95365400-95365800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr8:95365400-95365800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr8:95365400-95365800	Enhancers	NH-A	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links