Variant report

Variant	rs530090298
Chromosome Location	chr5:35855337-35855338
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	EBF1	chr5:35855278-35855566	GM12878	blood:	n/a	chr5:35855391-35855402

Variant related genes	Relation type
IL7R	TF binding region

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022761	chr5:35775802-35902546	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv881055	chr5:35850693-35858721	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv881685	chr5:35850693-35859863	Enhancers Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv881358	chr5:35850693-35861068	Enhancers Transcr. at gene 5' and 3' Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv880610	chr5:35850693-35866265	ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv880517	chr5:35850693-35870814	Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv597813	chr5:35855264-35864590	Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35849600-35856200	Enhancers	Dnd41	blood
2	chr5:35851800-35856800	Enhancers	NHDF-Ad	bronchial
3	chr5:35852000-35856800	Enhancers	Primary B cells from cord blood	blood
4	chr5:35852400-35856200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr5:35852400-35856600	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr5:35852400-35859200	Weak transcription	Lung	lung
7	chr5:35852400-35862800	Enhancers	Hela-S3	cervix
8	chr5:35852600-35855600	Weak transcription	A549	lung
9	chr5:35852600-35856400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr5:35852800-35856000	Transcr. at gene 5' and 3'	Primary T helper 17 cells PMA-I stimulated	--
11	chr5:35852800-35856600	Weak transcription	NH-A	brain
12	chr5:35852800-35857000	Weak transcription	Duodenum Mucosa	Duodenum
13	chr5:35853000-35855400	Weak transcription	HSMMtube	muscle
14	chr5:35853000-35855400	Weak transcription	NHLF	lung
15	chr5:35853000-35856400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr5:35853000-35856400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr5:35853000-35856600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr5:35853000-35856600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr5:35853000-35856800	Enhancers	Muscle Satellite Cultured Cells	--
20	chr5:35853000-35857000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr5:35853400-35855400	Weak transcription	HSMM	muscle
22	chr5:35853600-35856800	Enhancers	Fetal Thymus	thymus
23	chr5:35853800-35855400	Enhancers	Primary B cells from peripheral blood	blood
24	chr5:35853800-35856400	Weak transcription	Monocytes-CD14+_RO01746	blood
25	chr5:35853800-35857200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr5:35853800-35858000	Enhancers	GM12878-XiMat	blood
27	chr5:35854000-35855600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr5:35854200-35856400	Weak transcription	Primary monocytes fromperipheralblood	blood
29	chr5:35854200-35856800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr5:35854200-35857000	Enhancers	NHEK	skin
31	chr5:35854200-35857800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
32	chr5:35854400-35855400	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
33	chr5:35854400-35855800	Transcr. at gene 5' and 3'	Primary T helper cells PMA-I stimulated	--
34	chr5:35854400-35857200	Weak transcription	Esophagus	oesophagus
35	chr5:35854400-35857400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr5:35854800-35855400	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
37	chr5:35854800-35856000	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
38	chr5:35854800-35856200	Weak transcription	HMEC	breast
39	chr5:35854800-35856600	Flanking Active TSS	Primary T cells from cord blood	blood
40	chr5:35854800-35856800	Enhancers	Osteobl	bone
41	chr5:35854800-35857000	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
42	chr5:35854800-35857000	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
43	chr5:35854800-35857800	Weak transcription	Primary hematopoietic stem cells	blood
44	chr5:35855000-35855600	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
45	chr5:35855000-35855600	Flanking Active TSS	Thymus	Thymus
46	chr5:35855000-35855800	Flanking Active TSS	Primary T cells fromperipheralblood	blood
47	chr5:35855000-35855800	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
48	chr5:35855000-35856000	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
49	chr5:35855000-35857000	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
50	chr5:35855200-35855400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood

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