Variant report

Variant	rs530141777
Chromosome Location	chr5:167071880-167071881
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932627	chr5:166744408-167290959	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1032559	chr5:167070888-167210684	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:167067200-167084200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr5:167069000-167072600	Enhancers	HMEC	breast
3	chr5:167069200-167072000	Enhancers	Hela-S3	cervix
4	chr5:167069200-167072000	Enhancers	NHDF-Ad	bronchial
5	chr5:167069200-167072200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr5:167069200-167072200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr5:167069200-167072600	Enhancers	NHEK	skin
8	chr5:167069800-167072200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr5:167069800-167072400	Enhancers	A549	lung
10	chr5:167070000-167072200	Enhancers	Muscle Satellite Cultured Cells	--
11	chr5:167070800-167072000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr5:167071000-167072000	Enhancers	HSMMtube	muscle
13	chr5:167071200-167072000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr5:167071600-167072200	Genic enhancers	HSMM	muscle
15	chr5:167071800-167072400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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