Variant report

Variant	rs530155947
Chromosome Location	chr17:19778937-19778938
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062853	chr17:19547912-20206601	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
2	nsv1063892	chr17:19564634-19808485	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
3	nsv482398	chr17:19673458-19808039	Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Enhancers Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1057469	chr17:19696714-19787062	Weak transcription Strong transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv907868	chr17:19768924-20217122	Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
6	esv2763158	chr17:19777544-19789227	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:19771600-19779000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr17:19771600-19787000	Weak transcription	Gastric	stomach
3	chr17:19771800-19780000	Weak transcription	Pancreas	Pancrea
4	chr17:19774400-19779200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr17:19776000-19782200	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr17:19776800-19779000	Enhancers	Monocytes-CD14+_RO01746	blood
7	chr17:19777600-19779800	Enhancers	Primary T helper cells fromperipheralblood	blood
8	chr17:19778600-19779400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
9	chr17:19778600-19780000	Enhancers	Primary T cells fromperipheralblood	blood
10	chr17:19778600-19780000	Enhancers	Primary T killer memory cells from peripheral blood	blood
11	chr17:19778600-19780000	Enhancers	Fetal Thymus	thymus
12	chr17:19778600-19783200	Enhancers	Primary T helper cells PMA-I stimulated	--
13	chr17:19778800-19779800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr17:19778800-19780000	Enhancers	Primary T cells from cord blood	blood
15	chr17:19778800-19780000	Enhancers	Primary T helper naive cells from peripheral blood	blood
16	chr17:19778800-19780000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
17	chr17:19778800-19780000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr17:19778800-19781800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
19	chr17:19778800-19782000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
20	chr17:19778800-19782400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
21	chr17:19778800-19783400	Enhancers	Primary T killer naive cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links