Variant report

Variant	rs530215557
Chromosome Location	chr3:141235689-141235690
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006237	chr3:141227525-141300722	Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1014365	chr3:141235379-141282615	Weak transcription Strong transcription Genic enhancers Flanking Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:141207000-141235800	Weak transcription	Gastric	stomach
2	chr3:141207000-141255000	Weak transcription	Aorta	Aorta
3	chr3:141210400-141248000	Weak transcription	NHLF	lung
4	chr3:141216000-141239600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr3:141217800-141235800	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr3:141217800-141258400	Weak transcription	Psoas Muscle	Psoas
7	chr3:141226600-141235800	Weak transcription	Brain Angular Gyrus	brain
8	chr3:141226600-141236200	Weak transcription	Brain Substantia Nigra	brain
9	chr3:141226600-141254400	Weak transcription	Brain Cingulate Gyrus	brain
10	chr3:141227400-141242800	Weak transcription	Ovary	ovary
11	chr3:141227600-141235800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr3:141227600-141236200	Weak transcription	Lung	lung
13	chr3:141228400-141246600	Strong transcription	Dnd41	blood
14	chr3:141229000-141236200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr3:141229200-141236200	Weak transcription	Pancreatic Islets	Pancreatic Islet
16	chr3:141229400-141267400	Weak transcription	Fetal Heart	heart
17	chr3:141230000-141235800	Weak transcription	Colonic Mucosa	Colon
18	chr3:141230000-141235800	Weak transcription	Esophagus	oesophagus
19	chr3:141230000-141235800	Weak transcription	NHDF-Ad	bronchial
20	chr3:141230000-141236400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr3:141230000-141259800	Weak transcription	Small Intestine	intestine
22	chr3:141230400-141243000	Weak transcription	Spleen	Spleen
23	chr3:141231000-141236200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
24	chr3:141231000-141243000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
25	chr3:141231200-141237000	Strong transcription	Primary T cells fromperipheralblood	blood
26	chr3:141231200-141240200	Strong transcription	Primary B cells from peripheral blood	blood
27	chr3:141231200-141240800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr3:141231200-141245000	Strong transcription	Fetal Thymus	thymus
29	chr3:141231600-141254400	Weak transcription	Fetal Kidney	kidney
30	chr3:141231600-141263600	Weak transcription	Fetal Brain Male	brain
31	chr3:141231800-141235800	Strong transcription	Primary neutrophils fromperipheralblood	blood
32	chr3:141231800-141235800	Weak transcription	Placenta Amnion	Placenta Amnion
33	chr3:141231800-141242600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr3:141232000-141241800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr3:141232200-141235800	Strong transcription	Monocytes-CD14+_RO01746	blood
36	chr3:141232200-141237800	Strong transcription	Primary T helper cells fromperipheralblood	blood
37	chr3:141232200-141245600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
38	chr3:141232200-141254400	Weak transcription	H9 Cell Line	embryonic stem cell
39	chr3:141232400-141235800	Strong transcription	HUVEC	blood vessel
40	chr3:141232400-141236400	Strong transcription	HSMM	muscle
41	chr3:141232400-141240000	Strong transcription	HUES64 Cell Line	embryonic stem cell
42	chr3:141232600-141236400	Strong transcription	NH-A	brain
43	chr3:141232600-141239600	Strong transcription	Osteobl	bone
44	chr3:141232600-141244400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr3:141232800-141236600	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood
46	chr3:141232800-141236600	Strong transcription	Liver	Liver
47	chr3:141232800-141237200	Strong transcription	Duodenum Smooth Muscle	Duodenum
48	chr3:141232800-141239600	Strong transcription	Primary T cells from cord blood	blood
49	chr3:141232800-141240000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr3:141233000-141236400	Strong transcription	iPS-18 Cell Line	embryonic stem cell

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