Variant report

Variant	rs530245011
Chromosome Location	chr15:77741899-77741900
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:77740891..77743439-chr15:77748985..77751231,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000140382	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040852	chr15:77160237-78137541	Enhancers Flanking Active TSS Active TSS Strong transcription Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv1045376	chr15:77354671-77801487	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv542443	chr15:77354671-77801487	Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
4	nsv916323	chr15:77485765-78121259	Enhancers Strong transcription Weak transcription Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
5	nsv1043284	chr15:77740632-77884026	Weak transcription Strong transcription Genic enhancers Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:87 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:77714000-77748600	Weak transcription	Placenta	Placenta
2	chr15:77716800-77742600	Weak transcription	Hela-S3	cervix
3	chr15:77717000-77754400	Weak transcription	K562	blood
4	chr15:77720200-77743000	Weak transcription	Primary B cells from cord blood	blood
5	chr15:77727400-77747800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
6	chr15:77728200-77746200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr15:77729400-77747200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr15:77729600-77748000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
9	chr15:77729600-77749200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
10	chr15:77729800-77747200	Weak transcription	Primary T helper cells fromperipheralblood	blood
11	chr15:77730400-77748600	Weak transcription	Primary T cells fromperipheralblood	blood
12	chr15:77730600-77758800	Weak transcription	Lung	lung
13	chr15:77733200-77744600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr15:77733200-77748000	Weak transcription	HMEC	breast
15	chr15:77733200-77749200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
16	chr15:77733200-77750200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr15:77733400-77746800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr15:77733400-77747000	Weak transcription	NH-A	brain
19	chr15:77733400-77747000	Weak transcription	NHDF-Ad	bronchial
20	chr15:77733600-77742000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr15:77733600-77742000	Weak transcription	HSMM	muscle
22	chr15:77734000-77745000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr15:77734600-77746400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr15:77735200-77742200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr15:77735200-77742800	Weak transcription	Pancreatic Islets	Pancreatic Islet
26	chr15:77735200-77743200	Weak transcription	Primary hematopoietic stem cells	blood
27	chr15:77736400-77748800	Weak transcription	Pancreas	Pancrea
28	chr15:77736800-77749400	Weak transcription	Gastric	stomach
29	chr15:77736800-77750800	Weak transcription	H1 Cell Line	embryonic stem cell
30	chr15:77737000-77747800	Weak transcription	Fetal Kidney	kidney
31	chr15:77737200-77747000	Weak transcription	HUVEC	blood vessel
32	chr15:77737200-77749400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr15:77737800-77748000	Weak transcription	Left Ventricle	heart
34	chr15:77737800-77749200	Weak transcription	HUES48 Cell Line	embryonic stem cell
35	chr15:77738200-77749400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
36	chr15:77738400-77743200	Weak transcription	HUES6 Cell Line	embryonic stem cell
37	chr15:77738400-77747200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
38	chr15:77738400-77748000	Weak transcription	Psoas Muscle	Psoas
39	chr15:77738400-77749200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
40	chr15:77738400-77749400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
41	chr15:77738600-77747800	Weak transcription	Fetal Heart	heart
42	chr15:77738600-77750600	Weak transcription	Monocytes-CD14+_RO01746	blood
43	chr15:77739000-77750800	Weak transcription	Primary monocytes fromperipheralblood	blood
44	chr15:77739400-77742200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
45	chr15:77739600-77742800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
46	chr15:77739600-77748000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
47	chr15:77739600-77748000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
48	chr15:77739800-77746200	Weak transcription	Skeletal Muscle Female	skeletal muscle
49	chr15:77739800-77746400	Weak transcription	Skeletal Muscle Male	skeletal muscle
50	chr15:77739800-77747000	Weak transcription	Primary T helper cells PMA-I stimulated	--

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