Variant report

Variant	rs530292009
Chromosome Location	chr6:128185658-128185659
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830799	chr6:128033100-128194511	Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	esv1849854	chr6:128143774-128287313	Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv1024516	chr6:128184182-128298278	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:128178800-128190800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr6:128179200-128190400	Weak transcription	Brain Cingulate Gyrus	brain
3	chr6:128180400-128189600	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr6:128180400-128190600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr6:128180600-128189600	Weak transcription	Brain Substantia Nigra	brain
6	chr6:128181600-128185800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr6:128183800-128187000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
8	chr6:128184200-128186000	Strong transcription	Primary T cells fromperipheralblood	blood
9	chr6:128184200-128186200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
10	chr6:128184400-128186400	Genic enhancers	Primary T cells from cord blood	blood
11	chr6:128184600-128186200	Genic enhancers	Primary T helper naive cells from peripheral blood	blood
12	chr6:128184600-128186800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
13	chr6:128185200-128186000	Weak transcription	Primary T helper cells fromperipheralblood	blood
14	chr6:128185400-128187400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
15	chr6:128185600-128186200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
16	chr6:128185600-128186200	Genic enhancers	Fetal Thymus	thymus
17	chr6:128185600-128186400	Genic enhancers	Thymus	Thymus
18	chr6:128185600-128186600	Enhancers	Fetal Intestine Large	intestine
19	chr6:128185600-128187200	Genic enhancers	Primary T helper cells PMA-I stimulated	--

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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