Variant report

Variant	rs530298286
Chromosome Location	chr10:99472523-99472524
allele	-/CC
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:2)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:2 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr10:99472311-99472728	HUVEC	blood vessel:	n/a	n/a
2	POLR2A	chr10:99471308-99485768	MCF10A-Er-Src	breast:	n/a	n/a

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:99471547..99474270-chr10:99495747..99497533,2	K562	blood:
2	chr10:99472472..99476089-chr10:99494153..99498366,9	MCF-7	breast:
3	chr10:99443080..99453237-chr10:99471420..99478243,12	MCF-7	breast:
4	chr10:99472128..99477527-chr10:99495091..99498402,11	MCF-7	breast:
5	chr10:99442762..99448311-chr10:99470830..99475549,8	MCF-7	breast:
6	chr10:99444910..99448624-chr10:99472151..99475238,4	K562	blood:
7	chr10:99446266..99448824-chr10:99470047..99473651,4	K562	blood:

No data

Variant related genes	Relation type
MARVELD1	TF binding region
ENSG00000155256	Chromatin interaction
ENSG00000119986	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1817777	chr10:99196035-99558169	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	esv3438921	chr10:99472487-99475335	Weak transcription Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:99462000-99472800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr10:99466000-99472600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr10:99466400-99472600	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr10:99468400-99472800	Weak transcription	Liver	Liver
5	chr10:99469200-99472600	Weak transcription	Colonic Mucosa	Colon
6	chr10:99469400-99472600	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr10:99469400-99472600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr10:99469400-99472600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr10:99469400-99472600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr10:99469400-99472600	Weak transcription	HMEC	breast
11	chr10:99469400-99472800	Weak transcription	Dnd41	blood
12	chr10:99469400-99472800	Weak transcription	K562	blood
13	chr10:99469600-99472600	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr10:99469600-99472600	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr10:99469600-99472800	Weak transcription	Aorta	Aorta
16	chr10:99469600-99472800	Weak transcription	Brain Substantia Nigra	brain
17	chr10:99469600-99472800	Weak transcription	Fetal Intestine Large	intestine
18	chr10:99469600-99472800	Weak transcription	Left Ventricle	heart
19	chr10:99469800-99472600	Weak transcription	HUES6 Cell Line	embryonic stem cell
20	chr10:99469800-99472600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr10:99469800-99472600	Weak transcription	Fetal Intestine Small	intestine
22	chr10:99469800-99472600	Weak transcription	Ovary	ovary
23	chr10:99469800-99472600	Weak transcription	A549	lung
24	chr10:99469800-99472600	Weak transcription	NH-A	brain
25	chr10:99469800-99472600	Weak transcription	NHEK	skin
26	chr10:99469800-99472800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr10:99469800-99472800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr10:99469800-99472800	Weak transcription	Right Ventricle	heart
29	chr10:99469800-99472800	Weak transcription	HSMMtube	muscle
30	chr10:99470000-99472600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr10:99470000-99472600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr10:99470000-99472600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr10:99470000-99472600	Weak transcription	Muscle Satellite Cultured Cells	--
34	chr10:99470000-99472600	Weak transcription	NHLF	lung
35	chr10:99470000-99472800	Weak transcription	HSMM	muscle
36	chr10:99471200-99472600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr10:99471400-99472800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr10:99471400-99472800	Enhancers	NHDF-Ad	bronchial
39	chr10:99471400-99473000	Enhancers	Primary monocytes fromperipheralblood	blood
40	chr10:99471400-99473000	Enhancers	Primary neutrophils fromperipheralblood	blood
41	chr10:99471600-99472600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr10:99471600-99472600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr10:99471600-99472600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr10:99471600-99472600	Enhancers	Osteobl	bone
45	chr10:99471600-99472800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr10:99471600-99472800	Enhancers	Adipose Nuclei	Adipose
47	chr10:99471600-99472800	Enhancers	Fetal Muscle Trunk	muscle
48	chr10:99471600-99473000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
49	chr10:99471600-99473000	Enhancers	Placenta	Placenta
50	chr10:99471800-99472600	Enhancers	iPS-20b Cell Line	embryonic stem cell

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