Variant report

Variant rs530400127
Chromosome Location chr1:10697649-10697650
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:65 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:10632600-10698000 Weak transcription Primary T killer memory cells from peripheral blood blood
2 chr1:10651600-10715800 Weak transcription Pancreatic Islets Pancreatic Islet
3 chr1:10664400-10698000 Weak transcription Primary B cells from cord blood blood
4 chr1:10685200-10699400 Weak transcription Aorta Aorta
5 chr1:10686200-10698000 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
6 chr1:10687600-10698000 Weak transcription Small Intestine intestine
7 chr1:10691400-10698000 Weak transcription Primary Natural Killer cells fromperipheralblood blood
8 chr1:10691600-10703000 Weak transcription Primary B cells from peripheral blood blood
9 chr1:10691600-10706000 Weak transcription Dnd41 blood
10 chr1:10691800-10697800 Weak transcription Primary T helper cells PMA-I stimulated --
11 chr1:10692000-10697800 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
12 chr1:10692400-10699400 Weak transcription Duodenum Mucosa Duodenum
13 chr1:10692600-10698400 Weak transcription H9 Cell Line embryonic stem cell
14 chr1:10693200-10699400 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
15 chr1:10693600-10698000 Weak transcription Primary T helper 17 cells PMA-I stimulated --
16 chr1:10694200-10697800 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
17 chr1:10694400-10699400 Weak transcription Liver Liver
18 chr1:10694600-10698400 Weak transcription NHLF lung
19 chr1:10694800-10697800 Enhancers Stomach Mucosa stomach
20 chr1:10695400-10698200 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
21 chr1:10695800-10700400 Strong transcription Fetal Intestine Small intestine
22 chr1:10696000-10699400 Weak transcription Pancreas Pancrea
23 chr1:10696000-10699600 Weak transcription Fetal Heart heart
24 chr1:10696200-10698200 Weak transcription Rectal Mucosa Donor 29 rectum
25 chr1:10696200-10698400 Enhancers Breast Myoepithelial Primary Cells Breast
26 chr1:10696200-10698600 Weak transcription Left Ventricle heart
27 chr1:10696200-10704000 Weak transcription HSMMtube muscle
28 chr1:10696400-10698200 Weak transcription Right Atrium heart
29 chr1:10696400-10698200 Weak transcription Right Ventricle heart
30 chr1:10696400-10699600 Weak transcription Rectal Mucosa Donor 31 rectum
31 chr1:10696600-10698200 Weak transcription Psoas Muscle Psoas
32 chr1:10696600-10698600 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
33 chr1:10696600-10698800 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
34 chr1:10696600-10699400 Weak transcription Skeletal Muscle Female skeletal muscle
35 chr1:10696800-10698400 Enhancers NHEK skin
36 chr1:10697000-10697800 Enhancers HMEC breast
37 chr1:10697200-10698200 Bivalent Enhancer Fetal Muscle Leg muscle
38 chr1:10697200-10698400 Enhancers Skeletal Muscle Male skeletal muscle
39 chr1:10697400-10697800 Enhancers Colon Smooth Muscle Colon
40 chr1:10697400-10698000 Enhancers Stomach Smooth Muscle stomach
41 chr1:10697400-10698200 Bivalent Enhancer Foreskin Fibroblast Primary Cells skin01 Skin
42 chr1:10697400-10698200 Bivalent Enhancer Placenta Placenta
43 chr1:10697400-10698400 Enhancers H1 Derived Mesenchymal Stem Cells ES cell derived
44 chr1:10697400-10698400 Enhancers Primary T helper cells fromperipheralblood blood
45 chr1:10697400-10698400 Bivalent Enhancer Fetal Muscle Trunk muscle
46 chr1:10697400-10698400 Bivalent Enhancer Fetal Stomach stomach
47 chr1:10697400-10700800 Strong transcription Gastric stomach
48 chr1:10697400-10722000 Strong transcription Sigmoid Colon Sigmoid Colon
49 chr1:10697600-10697800 Bivalent Enhancer H1 Cell Line embryonic stem cell
50 chr1:10697600-10697800 ZNF genes & repeats iPS DF 19.11 Cell Line embryonic stem cell

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