Variant report

Variant	rs530480177
Chromosome Location	chr6:33535648-33535649
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:33532988..33536659-chr6:33537187..33540995,4	K562	blood:
2	chr6:33533712..33536819-chr6:33537641..33540205,3	MCF-7	breast:
3	chr6:33533870..33536735-chr6:33537311..33539466,2	MCF-7	breast:
4	chr6:33517814..33520773-chr6:33534546..33536789,2	K562	blood:

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv462896	chr6:33534880-33588147	Bivalent Enhancer Flanking Active TSS Weak transcription Strong transcription Active TSS Genic enhancers Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv602833	chr6:33534880-33588147	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:33516800-33537600	Weak transcription	Primary T cells fromperipheralblood	blood
2	chr6:33530400-33536800	Weak transcription	K562	blood
3	chr6:33530400-33537600	Weak transcription	GM12878-XiMat	blood
4	chr6:33530400-33538800	Weak transcription	Esophagus	oesophagus
5	chr6:33531000-33538200	Weak transcription	Primary T cells from cord blood	blood
6	chr6:33531400-33538400	Weak transcription	Osteobl	bone
7	chr6:33533200-33538400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr6:33533200-33538600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr6:33533600-33535800	Weak transcription	Fetal Stomach	stomach
10	chr6:33533600-33537600	Weak transcription	Fetal Thymus	thymus
11	chr6:33533800-33536000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr6:33533800-33538400	Weak transcription	Rectal Smooth Muscle	rectum
13	chr6:33534200-33538600	Weak transcription	Fetal Muscle Leg	muscle
14	chr6:33534400-33536000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
15	chr6:33534400-33538400	Weak transcription	Duodenum Mucosa	Duodenum
16	chr6:33534600-33536000	Enhancers	Breast Myoepithelial Primary Cells	Breast
17	chr6:33534600-33536000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr6:33534600-33536000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr6:33534600-33538400	Weak transcription	Stomach Smooth Muscle	stomach
20	chr6:33534600-33538600	Weak transcription	Fetal Intestine Small	intestine
21	chr6:33534600-33538800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
22	chr6:33534800-33536000	Genic enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr6:33534800-33537800	Weak transcription	Thymus	Thymus
24	chr6:33534800-33538400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr6:33534800-33538400	Weak transcription	Rectal Mucosa Donor 29	rectum
26	chr6:33535000-33536200	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr6:33535000-33538200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr6:33535000-33538400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr6:33535000-33538600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr6:33535000-33538600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr6:33535000-33538600	Weak transcription	HMEC	breast
32	chr6:33535200-33536000	Enhancers	HUES6 Cell Line	embryonic stem cell
33	chr6:33535200-33538400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr6:33535200-33538400	Weak transcription	Muscle Satellite Cultured Cells	--
35	chr6:33535400-33536000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
36	chr6:33535400-33538400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr6:33535600-33536200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
38	chr6:33535600-33536200	Enhancers	Brain Germinal Matrix	brain
39	chr6:33535600-33538400	Weak transcription	NHEK	skin
40	chr6:33535600-33538400	Weak transcription	NHLF	lung

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