Variant report

Variant	rs530525433
Chromosome Location	chr18:11765255-11765256
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:11761291..11763211-chr18:11764599..11766754,2	MCF-7	breast:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3362008	chr18:11647654-11959830	Active TSS Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv1065382	chr18:11723230-11769732	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv833590	chr18:11757329-11924539	Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
4	esv3422010	chr18:11765152-11769650	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:11752800-11767200	Weak transcription	Aorta	Aorta
2	chr18:11752800-11774000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr18:11753000-11767200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr18:11753000-11767200	Weak transcription	Esophagus	oesophagus
5	chr18:11753000-11768000	Weak transcription	HMEC	breast
6	chr18:11753000-11774800	Weak transcription	Stomach Smooth Muscle	stomach
7	chr18:11753000-11775400	Weak transcription	Gastric	stomach
8	chr18:11754000-11765400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr18:11755000-11765400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr18:11755200-11765600	Weak transcription	Brain Germinal Matrix	brain
11	chr18:11756600-11769200	Weak transcription	Fetal Brain Female	brain
12	chr18:11758200-11766800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr18:11758400-11785600	Weak transcription	Brain Anterior Caudate	brain
14	chr18:11761600-11765400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
15	chr18:11761600-11765600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr18:11761600-11766400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr18:11761600-11766800	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr18:11761800-11766000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr18:11761800-11767200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr18:11762200-11767000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr18:11762600-11765600	Weak transcription	H1 Cell Line	embryonic stem cell
22	chr18:11763400-11780400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr18:11764800-11767600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
24	chr18:11765000-11768200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr18:11765200-11767200	Enhancers	HUES64 Cell Line	embryonic stem cell

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