The 2.0 version of rSNPBase

Variant report

Variant rs530550531
Chromosome Location chr17:66381683-66381684
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:59 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr17:66354200-66390200 Weak transcription Primary T regulatory cells fromperipheralblood blood
2 chr17:66369000-66390800 Weak transcription Primary mononuclear cells fromperipheralblood Blood
3 chr17:66374400-66385800 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
4 chr17:66374800-66384800 Enhancers Foreskin Melanocyte Primary Cells skin01 Skin
5 chr17:66374800-66391000 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
6 chr17:66374800-66391000 Weak transcription Esophagus oesophagus
7 chr17:66375000-66381800 Enhancers NHLF lung
8 chr17:66375200-66382600 Weak transcription Duodenum Smooth Muscle Duodenum
9 chr17:66375400-66382000 Weak transcription Brain Anterior Caudate brain
10 chr17:66375400-66382800 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
11 chr17:66375400-66385400 Weak transcription Stomach Mucosa stomach
12 chr17:66378800-66389800 Enhancers Liver Liver
13 chr17:66379000-66383600 Enhancers Fetal Muscle Leg muscle
14 chr17:66379200-66385800 Enhancers Placenta Placenta
15 chr17:66379400-66382600 Enhancers H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
16 chr17:66379800-66381800 Enhancers Breast Myoepithelial Primary Cells Breast
17 chr17:66380000-66382000 Weak transcription Fetal Intestine Small intestine
18 chr17:66380200-66382200 Weak transcription Fetal Brain Male brain
19 chr17:66380400-66381800 Weak transcription Rectal Mucosa Donor 31 rectum
20 chr17:66380400-66382000 Weak transcription Ovary ovary
21 chr17:66380400-66382200 Enhancers Foreskin Fibroblast Primary Cells skin02 Skin
22 chr17:66380400-66382400 Weak transcription Rectal Smooth Muscle rectum
23 chr17:66380400-66382800 Weak transcription HSMMtube muscle
24 chr17:66380400-66383200 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
25 chr17:66380400-66390200 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
26 chr17:66380400-66390400 Weak transcription Thymus Thymus
27 chr17:66380400-66391000 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
28 chr17:66380600-66382400 Weak transcription Primary T helper naive cells fromperipheralblood blood
29 chr17:66380600-66383800 Enhancers Skeletal Muscle Male skeletal muscle
30 chr17:66380600-66385400 Enhancers Hela-S3 cervix
31 chr17:66380800-66387200 Enhancers HepG2 liver
32 chr17:66380800-66393000 Weak transcription Primary T cells from cord blood blood
33 chr17:66381000-66381800 Enhancers Osteobl bone
34 chr17:66381000-66383600 Enhancers Psoas Muscle Psoas
35 chr17:66381000-66384400 Enhancers Right Atrium heart
36 chr17:66381000-66384600 Enhancers Left Ventricle heart
37 chr17:66381000-66392800 Weak transcription Primary T helper naive cells from peripheral blood blood
38 chr17:66381000-66393000 Weak transcription Primary T killer memory cells from peripheral blood blood
39 chr17:66381000-66394800 Weak transcription Primary B cells from cord blood blood
40 chr17:66381000-66394800 Weak transcription Fetal Kidney kidney
41 chr17:66381200-66382000 Enhancers Lung lung
42 chr17:66381200-66383600 Enhancers Fetal Muscle Trunk muscle
43 chr17:66381200-66383600 Enhancers Right Ventricle heart
44 chr17:66381200-66383800 Enhancers Pancreas Pancrea
45 chr17:66381200-66383800 Enhancers Skeletal Muscle Female skeletal muscle
46 chr17:66381200-66384000 Enhancers Fetal Heart heart
47 chr17:66381400-66382200 Weak transcription Fetal Lung lung
48 chr17:66381400-66382200 Weak transcription Fetal Thymus thymus
49 chr17:66381400-66382600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
50 chr17:66381400-66382800 Weak transcription NH-A brain

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Last update: Aug 31, 2015