Variant report

Variant	rs530582264
Chromosome Location	chr10:112564282-112564283
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:14)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:14 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:112564097..112567793-chr10:112569786..112571719,3	MCF-7	breast:
2	chr10:112562895..112565323-chr10:112578777..112581369,2	K562	blood:
3	chr10:112562682..112564741-chr10:112566724..112568597,2	K562	blood:
4	chr10:112561819..112564903-chr10:112677078..112679804,3	MCF-7	breast:
5	chr10:112563768..112566237-chr10:112662611..112664819,2	K562	blood:
6	chr10:112563537..112565661-chr10:112631635..112633969,3	MCF-7	breast:
7	chr10:112562735..112565358-chr10:112599409..112602252,2	MCF-7	breast:
8	chr10:112563375..112566130-chr10:112568241..112569894,2	MCF-7	breast:
9	chr10:112563889..112566843-chr10:112632108..112634836,3	MCF-7	breast:
10	chr10:112065247..112068182-chr10:112564136..112566430,2	MCF-7	breast:
11	chr10:112563350..112568484-chr10:112581268..112585698,6	MCF-7	breast:
12	chr10:112562895..112564656-chr10:112578685..112581369,2	K562	blood:
13	chr10:112559443..112561037-chr10:112563760..112565713,2	MCF-7	breast:
14	chr10:112563279..112564533-chr10:112653040..112653982,5	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000203497	Chromatin interaction
ENSG00000203867	Chromatin interaction
ENSG00000150593	Chromatin interaction
ENSG00000108061	Chromatin interaction
ENSG00000214413	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045608	chr10:112524813-112677557	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv1041758	chr10:112552897-112677557	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv24150	chr10:112563598-112568976	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:112558000-112570200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr10:112558000-112578400	Weak transcription	Aorta	Aorta
3	chr10:112559400-112567200	Weak transcription	Right Ventricle	heart
4	chr10:112561600-112564400	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr10:112561600-112564400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr10:112561600-112564400	Enhancers	Duodenum Smooth Muscle	Duodenum
7	chr10:112561600-112564400	Enhancers	Rectal Smooth Muscle	rectum
8	chr10:112561600-112565600	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr10:112561800-112564400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
10	chr10:112561800-112565000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr10:112561800-112565200	Enhancers	Primary B cells from peripheral blood	blood
12	chr10:112561800-112565200	Enhancers	Primary T killer memory cells from peripheral blood	blood
13	chr10:112561800-112565400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr10:112561800-112565600	Enhancers	Primary T helper cells fromperipheralblood	blood
15	chr10:112561800-112565600	Enhancers	Colon Smooth Muscle	Colon
16	chr10:112561800-112565600	Enhancers	Fetal Thymus	thymus
17	chr10:112562000-112564400	Enhancers	Fetal Intestine Small	intestine
18	chr10:112562000-112565000	Enhancers	Primary B cells from cord blood	blood
19	chr10:112562000-112565000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
20	chr10:112562000-112565000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
21	chr10:112562000-112565000	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
22	chr10:112562000-112565400	Enhancers	Primary T cells fromperipheralblood	blood
23	chr10:112562000-112565600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
24	chr10:112562000-112565600	Enhancers	Stomach Mucosa	stomach
25	chr10:112562200-112564800	Enhancers	Fetal Intestine Large	intestine
26	chr10:112562200-112565000	Enhancers	Primary hematopoietic stem cells	blood
27	chr10:112562200-112565800	Enhancers	Rectal Mucosa Donor 31	rectum
28	chr10:112562400-112564800	Enhancers	Primary hematopoietic stem cells short term culture	blood
29	chr10:112562400-112566400	Enhancers	Esophagus	oesophagus
30	chr10:112562800-112565000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
31	chr10:112562800-112565200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
32	chr10:112562800-112576800	Weak transcription	Psoas Muscle	Psoas
33	chr10:112563000-112572800	Enhancers	Fetal Heart	heart
34	chr10:112563200-112564400	Enhancers	Placenta	Placenta
35	chr10:112563200-112565400	Enhancers	Primary T helper cells PMA-I stimulated	--
36	chr10:112563600-112564800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
37	chr10:112563600-112565600	Genic enhancers	Left Ventricle	heart
38	chr10:112563800-112564400	Enhancers	Skeletal Muscle Female	skeletal muscle
39	chr10:112563800-112564600	Flanking Active TSS	Primary T cells from cord blood	blood
40	chr10:112564000-112565200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr10:112564000-112565600	Enhancers	Pancreas	Pancrea
42	chr10:112564000-112566200	Weak transcription	HSMMtube	muscle
43	chr10:112564000-112581600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr10:112564200-112565000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr10:112564200-112565200	Weak transcription	Colonic Mucosa	Colon
46	chr10:112564200-112565400	Enhancers	Primary T helper naive cells from peripheral blood	blood
47	chr10:112564200-112565600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
48	chr10:112564200-112565600	Enhancers	Duodenum Mucosa	Duodenum
49	chr10:112564200-112565600	Enhancers	Rectal Mucosa Donor 29	rectum
50	chr10:112564200-112565600	Enhancers	GM12878-XiMat	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links