Variant report

Variant	rs530608102
Chromosome Location	chr2:190364909-190364910
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533029	chr2:189812229-190554339	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv875615	chr2:190215527-190444392	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	nsv584062	chr2:190272195-190376493	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
4	esv3439566	chr2:190364328-190376661	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:190335000-190366200	Weak transcription	Ovary	ovary
2	chr2:190349200-190365000	Weak transcription	Fetal Intestine Large	intestine
3	chr2:190363000-190366400	Enhancers	Stomach Mucosa	stomach
4	chr2:190363400-190365200	Enhancers	Small Intestine	intestine
5	chr2:190363600-190365000	Weak transcription	Fetal Intestine Small	intestine
6	chr2:190363800-190367000	Weak transcription	Fetal Lung	lung
7	chr2:190364000-190367000	Enhancers	Primary neutrophils fromperipheralblood	blood
8	chr2:190364400-190366400	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr2:190364600-190365600	Enhancers	Monocytes-CD14+_RO01746	blood
10	chr2:190364600-190366400	Enhancers	Duodenum Mucosa	Duodenum
11	chr2:190364800-190366400	Enhancers	Pancreatic Islets	Pancreatic Islet
12	chr2:190364800-190366400	Active TSS	Skeletal Muscle Female	skeletal muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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