Variant report

Variant	rs530694562
Chromosome Location	chr3:56716183-56716184
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:56705021..56708606-chr3:56714722..56718211,5	MCF-7	breast:
2	chr3:56714433..56716910-chr3:57020526..57023323,2	MCF-7	breast:
3	chr3:56715125..56717534-chr4:38104477..38107344,2	MCF-7	breast:
4	chr3:56589231..56591997-chr3:56715959..56718849,3	K562	blood:
5	chr12:50134951..50135493-chr3:56716063..56717030,2	Hela-S3	cervix:
6	chr3:56666598..56668908-chr3:56715764..56717337,2	MCF-7	breast:
7	chr3:56589586..56592975-chr3:56714350..56719200,6	K562	blood:
8	chr3:56715514..56718317-chr3:56833414..56836251,4	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000163946	Chromatin interaction
ENSG00000163947	Chromatin interaction
ENSG00000180376	Chromatin interaction
ENSG00000139644	Chromatin interaction
ENSG00000065882	Chromatin interaction

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3327056	chr3:56715937-56718485	Active TSS Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:56675800-56716200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr3:56699600-56716200	Weak transcription	Spleen	Spleen
3	chr3:56702400-56716200	Weak transcription	Small Intestine	intestine
4	chr3:56703000-56716200	Weak transcription	Ovary	ovary
5	chr3:56704800-56716200	Weak transcription	Left Ventricle	heart
6	chr3:56705200-56716200	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr3:56705400-56716200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr3:56705400-56716200	Weak transcription	Gastric	stomach
9	chr3:56707200-56716200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr3:56707200-56716200	Weak transcription	Esophagus	oesophagus
11	chr3:56713000-56716200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr3:56713000-56716200	Weak transcription	Lung	lung
13	chr3:56713000-56716200	Weak transcription	Pancreas	Pancrea
14	chr3:56713600-56717600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr3:56713800-56717400	Active TSS	iPS-20b Cell Line	embryonic stem cell
16	chr3:56713800-56717400	Active TSS	GM12878-XiMat	blood
17	chr3:56713800-56717400	Active TSS	K562	blood
18	chr3:56714600-56717400	Active TSS	ES-I3 Cell Line	embryonic stem cell
19	chr3:56714600-56717400	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr3:56714800-56716200	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
21	chr3:56714800-56716400	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
22	chr3:56714800-56716400	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
23	chr3:56714800-56717400	Active TSS	HMEC	breast
24	chr3:56714800-56717600	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr3:56715000-56716400	Flanking Active TSS	NHEK	skin
26	chr3:56715000-56717400	Active TSS	HUES6 Cell Line	embryonic stem cell
27	chr3:56715200-56716400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr3:56715200-56716400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr3:56715200-56716400	Flanking Active TSS	Muscle Satellite Cultured Cells	--
30	chr3:56715200-56716400	Flanking Active TSS	Dnd41	blood
31	chr3:56715200-56716400	Flanking Active TSS	HUVEC	blood vessel
32	chr3:56715200-56716400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
33	chr3:56715200-56716400	Flanking Active TSS	Osteobl	bone
34	chr3:56715200-56717400	Active TSS	H1 Cell Line	embryonic stem cell
35	chr3:56715200-56717600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr3:56715200-56717800	Active TSS	Thymus	Thymus
37	chr3:56715400-56716200	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
38	chr3:56715400-56716400	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr3:56715400-56716400	Flanking Active TSS	Primary hematopoietic stem cells	blood
40	chr3:56715400-56716400	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
41	chr3:56715400-56716400	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
42	chr3:56715400-56716400	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
43	chr3:56715400-56716400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr3:56715400-56716400	Flanking Active TSS	Liver	Liver
45	chr3:56715400-56716600	Flanking Active TSS	Primary B cells from cord blood	blood
46	chr3:56715400-56717400	Active TSS	ES-WA7 Cell Line	embryonic stem cell
47	chr3:56715400-56717400	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
48	chr3:56715400-56717400	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
49	chr3:56715400-56717400	Active TSS	A549	lung
50	chr3:56715400-56717600	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin

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