Variant report

Variant	rs530787345
Chromosome Location	chr2:185463175-185463176
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-NCKAP1-5	chr2:185462995-185463775	NONHSAT075952

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875497	chr2:185134237-185474770	Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
2	nsv875512	chr2:185300641-185474770	Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv532412	chr2:185347334-186108701	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
4	esv1818452	chr2:185428946-185503154	Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Weak transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	esv3437193	chr2:185461732-185464880	Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:185461200-185466200	Active TSS	NHLF	lung
2	chr2:185461400-185464000	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr2:185461400-185464000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr2:185461400-185466200	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr2:185461600-185463200	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr2:185461600-185463800	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr2:185461600-185463800	Active TSS	Primary monocytes fromperipheralblood	blood
8	chr2:185461600-185464000	Active TSS	Brain Angular Gyrus	brain
9	chr2:185461600-185464000	Active TSS	Brain Germinal Matrix	brain
10	chr2:185461600-185464000	Active TSS	Brain Substantia Nigra	brain
11	chr2:185461600-185464400	Active TSS	Brain Cingulate Gyrus	brain
12	chr2:185461600-185464600	Active TSS	Brain Anterior Caudate	brain
13	chr2:185461600-185464600	Active TSS	Brain Inferior Temporal Lobe	brain
14	chr2:185461600-185465200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
15	chr2:185461600-185466200	Active TSS	Fetal Brain Female	brain
16	chr2:185461800-185463600	Active TSS	Ovary	ovary
17	chr2:185461800-185464000	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr2:185461800-185464000	Active TSS	Monocytes-CD14+_RO01746	blood
19	chr2:185461800-185464200	Bivalent/Poised TSS	Primary T cells from cord blood	blood
20	chr2:185461800-185464400	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
21	chr2:185461800-185464800	Bivalent/Poised TSS	Duodenum Mucosa	Duodenum
22	chr2:185461800-185466000	Active TSS	Fetal Stomach	stomach
23	chr2:185462000-185463400	Active TSS	HSMMtube	muscle
24	chr2:185462000-185463600	Bivalent/Poised TSS	Stomach Mucosa	stomach
25	chr2:185462000-185463800	Active TSS	H9 Cell Line	embryonic stem cell
26	chr2:185462000-185463800	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
27	chr2:185462000-185463800	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
28	chr2:185462000-185463800	Active TSS	Colon Smooth Muscle	Colon
29	chr2:185462000-185464000	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr2:185462000-185464000	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr2:185462000-185464000	Active TSS	Pancreatic Islets	Pancreatic Islet
32	chr2:185462000-185464200	Flanking Active TSS	Liver	Liver
33	chr2:185462000-185464200	Bivalent/Poised TSS	Rectal Mucosa Donor 31	rectum
34	chr2:185462000-185464600	Active TSS	Hela-S3	cervix
35	chr2:185462000-185466000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr2:185462200-185463400	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
37	chr2:185462200-185463400	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
38	chr2:185462200-185463400	Active TSS	Aorta	Aorta
39	chr2:185462200-185463400	Active TSS	Right Ventricle	heart
40	chr2:185462200-185463800	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
41	chr2:185462200-185463800	Active TSS	Brain Hippocampus Middle	brain
42	chr2:185462200-185463800	Active TSS	Left Ventricle	heart
43	chr2:185462200-185463800	Active TSS	Rectal Smooth Muscle	rectum
44	chr2:185462200-185464000	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
45	chr2:185462200-185464000	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr2:185462200-185464200	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
47	chr2:185462200-185464400	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
48	chr2:185462200-185464400	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
49	chr2:185462200-185464400	Bivalent/Poised TSS	iPS DF 6.9 Cell Line	embryonic stem cell
50	chr2:185462200-185464800	Active TSS	K562	blood

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