Variant report

Variant	rs530790121
Chromosome Location	chr7:150863783-150863784
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:150820141..150822604-chr7:150863393..150866266,2	MCF-7	breast:
2	chr7:150824108..150825865-chr7:150861440..150864326,2	K562	blood:
3	chr7:150862132..150865299-chr7:150928833..150931121,3	MCF-7	breast:
4	chr7:150855142..150857552-chr7:150862337..150864254,3	MCF-7	breast:
5	chr7:150863436..150865058-chr7:150871430..150873448,2	MCF-7	breast:
6	chr7:150852560..150855237-chr7:150861683..150864566,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000033100	Chromatin interaction
ENSG00000164900	Chromatin interaction
ENSG00000133612	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1821419	chr7:150593315-150974269	Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	128 gene(s)	inside rSNPs	diseases
2	nsv539198	chr7:150643928-150879259	Weak transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases
3	nsv889476	chr7:150729212-150951819	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	120 gene(s)	inside rSNPs	diseases
4	nsv889478	chr7:150732812-150889527	Strong transcription Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	61 gene(s)	inside rSNPs	diseases
5	nsv831188	chr7:150735204-150912875	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
6	nsv889486	chr7:150775306-150891641	Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	48 gene(s)	inside rSNPs	diseases
7	nsv609034	chr7:150830015-150893629	Enhancers Active TSS Weak transcription Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
8	esv3427035	chr7:150862769-150866067	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	esv3394866	chr7:150863244-150866392	Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:150863000-150864800	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
2	chr7:150863400-150863800	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr7:150863400-150864200	Bivalent Enhancer	Primary B cells from peripheral blood	blood
4	chr7:150863600-150863800	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
5	chr7:150863600-150863800	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
6	chr7:150863600-150863800	Bivalent Enhancer	Primary B cells from cord blood	blood
7	chr7:150863600-150863800	Bivalent Enhancer	Stomach Smooth Muscle	stomach
8	chr7:150863600-150864000	Bivalent Enhancer	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr7:150863600-150864000	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
10	chr7:150863600-150864000	Bivalent Enhancer	Primary T helper naive cells fromperipheralblood	blood
11	chr7:150863600-150864000	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 1	blood
12	chr7:150863600-150864000	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr7:150863600-150864000	Bivalent Enhancer	Duodenum Smooth Muscle	Duodenum
14	chr7:150863600-150864000	Active TSS	Ovary	ovary
15	chr7:150863600-150864200	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr7:150863600-150864200	Bivalent Enhancer	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr7:150863600-150864200	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr7:150863600-150864200	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
19	chr7:150863600-150864400	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
20	chr7:150863600-150865000	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
21	chr7:150863600-150865600	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell

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