Variant report

Variant	rs530834553
Chromosome Location	chr15:27113968-27113969
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530664	chr15:26821078-27296222	ZNF genes & repeats Bivalent Enhancer Weak transcription Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1041629	chr15:26919868-27192078	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv1823300	chr15:27068434-27116718	Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv530815	chr15:27102003-27866013	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
5	esv1836031	chr15:27112265-27189168	ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:27111200-27114000	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
2	chr15:27111800-27114000	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
3	chr15:27111800-27114000	Bivalent Enhancer	Fetal Brain Male	brain
4	chr15:27111800-27114000	Active TSS	A549	lung
5	chr15:27112000-27114000	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
6	chr15:27112000-27114000	Bivalent/Poised TSS	Brain Anterior Caudate	brain
7	chr15:27112000-27114000	Bivalent/Poised TSS	Fetal Brain Female	brain
8	chr15:27113000-27114000	Bivalent/Poised TSS	Brain Hippocampus Middle	brain
9	chr15:27113600-27114000	Flanking Bivalent TSS/Enh	ES-I3 Cell Line	embryonic stem cell
10	chr15:27113600-27114000	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
11	chr15:27113600-27114000	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
12	chr15:27113800-27114000	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
13	chr15:27113800-27114000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr15:27113800-27114000	Bivalent Enhancer	H9 Cell Line	embryonic stem cell
15	chr15:27113800-27114000	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
16	chr15:27113800-27114000	Bivalent Enhancer	Brain Germinal Matrix	brain
17	chr15:27113800-27127400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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