Variant report

Variant	rs530844719
Chromosome Location	chr4:85504635-85504636
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:85503502..85505436-chr4:85887662..85889953,2	MCF-7	breast:
2	chr4:85503339..85505737-chr4:85885750..85887907,3	MCF-7	breast:
3	chr4:85502738..85504984-chr4:89443554..89446248,2	MCF-7	breast:
4	chr4:85502095..85504944-chr4:85602108..85604379,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000138641	Chromatin interaction
ENSG00000180769	Chromatin interaction
ENSG00000163625	Chromatin interaction
ENSG00000145337	Chromatin interaction

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3427170	chr4:85503153-85505701	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Weak transcription	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:85503200-85505000	Active TSS	ES-I3 Cell Line	embryonic stem cell
2	chr4:85503200-85505000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr4:85503200-85505400	Active TSS	ES-WA7 Cell Line	embryonic stem cell
4	chr4:85503200-85505600	Active TSS	Pancreatic Islets	Pancreatic Islet
5	chr4:85503400-85504800	Active TSS	Fetal Brain Female	brain
6	chr4:85503400-85505000	Bivalent/Poised TSS	Osteobl	bone
7	chr4:85503400-85505200	Active TSS	HUES48 Cell Line	embryonic stem cell
8	chr4:85503400-85505200	Active TSS	iPS-15b Cell Line	embryonic stem cell
9	chr4:85503400-85505400	Bivalent/Poised TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr4:85503400-85505400	Active TSS	Placenta Amnion	Placenta Amnion
11	chr4:85503400-85505600	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr4:85503400-85505800	Active TSS	Brain Angular Gyrus	brain
13	chr4:85503400-85505800	Active TSS	Brain Inferior Temporal Lobe	brain
14	chr4:85503600-85504800	Active TSS	HUES64 Cell Line	embryonic stem cell
15	chr4:85503600-85504800	Active TSS	iPS-20b Cell Line	embryonic stem cell
16	chr4:85503600-85504800	Bivalent/Poised TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr4:85503600-85504800	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr4:85503600-85504800	Active TSS	Primary T killer memory cells from peripheral blood	blood
19	chr4:85503600-85504800	Active TSS	Left Ventricle	heart
20	chr4:85503600-85504800	Active TSS	Hela-S3	cervix
21	chr4:85503600-85504800	Bivalent/Poised TSS	HSMM	muscle
22	chr4:85503600-85505000	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr4:85503600-85505000	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
24	chr4:85503600-85505000	Weak transcription	Fetal Heart	heart
25	chr4:85503600-85505000	Active TSS	Small Intestine	intestine
26	chr4:85503600-85505200	Bivalent/Poised TSS	Primary mononuclear cells fromperipheralblood	Blood
27	chr4:85503600-85505200	Active TSS	Aorta	Aorta
28	chr4:85503600-85505200	Active TSS	Ovary	ovary
29	chr4:85503600-85505400	Active TSS	Breast Myoepithelial Primary Cells	Breast
30	chr4:85503600-85505400	Active TSS	Brain Substantia Nigra	brain
31	chr4:85503600-85505600	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
32	chr4:85503600-85505600	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
33	chr4:85503600-85505600	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr4:85503600-85505600	Active TSS	Brain Cingulate Gyrus	brain
35	chr4:85503600-85505600	Active TSS	Brain Hippocampus Middle	brain
36	chr4:85503600-85505600	Bivalent/Poised TSS	Fetal Kidney	kidney
37	chr4:85503600-85505800	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
38	chr4:85503600-85505800	Active TSS	Esophagus	oesophagus
39	chr4:85503600-85505800	Bivalent/Poised TSS	Fetal Intestine Large	intestine
40	chr4:85503600-85506000	Active TSS	H9 Cell Line	embryonic stem cell
41	chr4:85503600-85506200	Active TSS	Brain Anterior Caudate	brain
42	chr4:85503800-85504800	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
43	chr4:85503800-85504800	Active TSS	Primary T helper naive cells from peripheral blood	blood
44	chr4:85503800-85504800	Active TSS	Primary T helper naive cells fromperipheralblood	blood
45	chr4:85503800-85504800	Active TSS	Primary T killer naive cells fromperipheralblood	blood
46	chr4:85503800-85504800	Active TSS	Muscle Satellite Cultured Cells	--
47	chr4:85503800-85504800	Bivalent/Poised TSS	Fetal Stomach	stomach
48	chr4:85503800-85504800	Active TSS	Sigmoid Colon	Sigmoid Colon
49	chr4:85503800-85504800	Active TSS	NHDF-Ad	bronchial
50	chr4:85503800-85505200	Bivalent/Poised TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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