Variant report

Variant	rs530866131
Chromosome Location	chr9:96385840-96385841
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:96379107..96381453-chr9:96385591..96387233,2	MCF-7	breast:
2	chr9:96381800..96384732-chr9:96385534..96387472,3	MCF-7	breast:
3	chr9:96385198..96387004-chr9:96393310..96394874,2	MCF-7	breast:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040891	chr9:96361529-96397338	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv1044461	chr9:96362048-96397338	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv893585	chr9:96363859-96403367	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv893586	chr9:96363859-96493773	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv1055035	chr9:96372269-96402747	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv1036609	chr9:96375217-96477641	Strong transcription Weak transcription ZNF genes & repeats Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
7	nsv519449	chr9:96382100-96395429	Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv893587	chr9:96383605-96451784	Weak transcription Genic enhancers Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
9	esv3358961	chr9:96383731-96388429	Strong transcription ZNF genes & repeats Enhancers Weak transcription Genic enhancers Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	esv3436865	chr9:96384631-96389129	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	esv3350789	chr9:96385131-96388429	Enhancers Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96363200-96392000	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr9:96366600-96386600	Weak transcription	Fetal Heart	heart
3	chr9:96372800-96392000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr9:96373400-96386200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr9:96373400-96387000	Weak transcription	Fetal Brain Female	brain
6	chr9:96373400-96390000	Weak transcription	Primary B cells from cord blood	blood
7	chr9:96374600-96399800	Weak transcription	K562	blood
8	chr9:96375200-96391800	Weak transcription	Colonic Mucosa	Colon
9	chr9:96375600-96390000	Weak transcription	Rectal Smooth Muscle	rectum
10	chr9:96375800-96386200	Weak transcription	Dnd41	blood
11	chr9:96375800-96390000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
12	chr9:96376200-96393000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr9:96376400-96390000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr9:96376600-96390000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr9:96377200-96389200	Weak transcription	Monocytes-CD14+_RO01746	blood
16	chr9:96377800-96386600	Weak transcription	Fetal Kidney	kidney
17	chr9:96379600-96390000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr9:96379600-96390000	Weak transcription	Aorta	Aorta
19	chr9:96379800-96391800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr9:96380000-96386600	Weak transcription	Fetal Lung	lung
21	chr9:96380200-96411800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
22	chr9:96380400-96386800	Enhancers	Right Ventricle	heart
23	chr9:96380800-96390000	Weak transcription	Thymus	Thymus
24	chr9:96380800-96399800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr9:96382800-96391600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr9:96383400-96386800	Enhancers	Spleen	Spleen
27	chr9:96383600-96386800	Enhancers	Skeletal Muscle Male	skeletal muscle
28	chr9:96384000-96386800	Weak transcription	Primary T cells from cord blood	blood
29	chr9:96384000-96396400	Weak transcription	Rectal Mucosa Donor 31	rectum
30	chr9:96384200-96387200	Weak transcription	Fetal Muscle Leg	muscle
31	chr9:96384400-96390000	Weak transcription	Sigmoid Colon	Sigmoid Colon
32	chr9:96384400-96391800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
33	chr9:96384600-96386400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
34	chr9:96384600-96389800	Weak transcription	Fetal Muscle Trunk	muscle
35	chr9:96384600-96393600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
36	chr9:96384600-96412200	Weak transcription	Stomach Mucosa	stomach
37	chr9:96384800-96390000	Weak transcription	Fetal Intestine Small	intestine
38	chr9:96384800-96391600	Weak transcription	Gastric	stomach
39	chr9:96385000-96390200	Weak transcription	Brain Cingulate Gyrus	brain
40	chr9:96385200-96386200	Weak transcription	Primary T cells fromperipheralblood	blood
41	chr9:96385200-96386400	Enhancers	Ovary	ovary
42	chr9:96385400-96386200	Weak transcription	Lung	lung
43	chr9:96385400-96389800	Weak transcription	Fetal Stomach	stomach
44	chr9:96385400-96392000	Weak transcription	Pancreas	Pancrea
45	chr9:96385600-96386200	Weak transcription	Stomach Smooth Muscle	stomach
46	chr9:96385600-96386600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
47	chr9:96385800-96386800	Weak transcription	Left Ventricle	heart
48	chr9:96385800-96387000	Weak transcription	Right Atrium	heart
49	chr9:96385800-96392200	Weak transcription	Skeletal Muscle Female	skeletal muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links