Variant report

Variant	rs530873115
Chromosome Location	chr3:177624775-177624776
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-KCNMB2-1	chr3:177624713-177624884	NONHSAT093360

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931055	chr3:177229521-177889872	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv979904	chr3:177624544-177633799	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:177617800-177628000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr3:177620600-177625200	Enhancers	NHLF	lung
3	chr3:177621200-177625000	Enhancers	Fetal Kidney	kidney
4	chr3:177621800-177625800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr3:177622000-177625000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr3:177622000-177625000	Enhancers	NHDF-Ad	bronchial
7	chr3:177622000-177625400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr3:177622000-177625400	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr3:177622200-177625200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr3:177622400-177624800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr3:177622400-177624800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr3:177622400-177625000	Enhancers	HMEC	breast
13	chr3:177622400-177625200	Enhancers	Brain Anterior Caudate	brain
14	chr3:177622600-177624800	Enhancers	Colon Smooth Muscle	Colon
15	chr3:177622600-177625000	Enhancers	Aorta	Aorta
16	chr3:177622600-177625000	Enhancers	Fetal Lung	lung
17	chr3:177622600-177625000	Enhancers	Fetal Muscle Leg	muscle
18	chr3:177622600-177625200	Enhancers	Adipose Nuclei	Adipose
19	chr3:177622800-177625000	Enhancers	Brain Inferior Temporal Lobe	brain
20	chr3:177622800-177625000	Enhancers	Fetal Stomach	stomach
21	chr3:177623000-177625200	Enhancers	Muscle Satellite Cultured Cells	--
22	chr3:177623200-177624800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr3:177623200-177625000	Enhancers	Brain Hippocampus Middle	brain
24	chr3:177623400-177625000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr3:177623600-177624800	Weak transcription	Pancreas	Pancrea
26	chr3:177623800-177624800	Weak transcription	Brain Cingulate Gyrus	brain
27	chr3:177623800-177625000	Enhancers	HSMM	muscle
28	chr3:177624000-177624800	Weak transcription	Liver	Liver
29	chr3:177624000-177625000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr3:177624000-177625000	Enhancers	NH-A	brain
31	chr3:177624200-177625000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr3:177624200-177625000	Weak transcription	Brain Germinal Matrix	brain
33	chr3:177624200-177625400	Enhancers	Fetal Brain Male	brain
34	chr3:177624400-177624800	Weak transcription	Fetal Brain Female	brain
35	chr3:177624400-177625400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr3:177624400-177646600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr3:177624600-177624800	Flanking Active TSS	HSMMtube	muscle
38	chr3:177624600-177624800	Flanking Active TSS	Osteobl	bone

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