The 2.0 version of rSNPBase

Variant report

Variant rs530893443
Chromosome Location chr5:41510123-41510124
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:72 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:41505600-41511400 Active TSS Right Atrium heart
2 chr5:41505800-41511400 Active TSS Right Ventricle heart
3 chr5:41506800-41511000 Active TSS Ovary ovary
4 chr5:41507800-41511200 Active TSS Left Ventricle heart
5 chr5:41508000-41511000 Active TSS Fetal Heart heart
6 chr5:41508200-41511400 Active TSS Pancreatic Islets Pancreatic Islet
7 chr5:41508400-41511000 Active TSS hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
8 chr5:41509400-41510200 Enhancers Gastric stomach
9 chr5:41509400-41510400 Bivalent/Poised TSS Brain Anterior Caudate brain
10 chr5:41509400-41510400 Bivalent/Poised TSS Fetal Brain Male brain
11 chr5:41509400-41510400 Flanking Bivalent TSS/Enh Fetal Brain Female brain
12 chr5:41509400-41510600 Flanking Bivalent TSS/Enh Brain Germinal Matrix brain
13 chr5:41509400-41510800 Flanking Active TSS Pancreas Pancrea
14 chr5:41509400-41511000 Bivalent/Poised TSS ES-I3 Cell Line embryonic stem cell
15 chr5:41509400-41511200 Bivalent/Poised TSS iPS-18 Cell Line embryonic stem cell
16 chr5:41509400-41511200 Active TSS Brain Substantia Nigra brain
17 chr5:41509600-41510200 Bivalent/Poised TSS Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
18 chr5:41509600-41510200 Bivalent Enhancer Liver Liver
19 chr5:41509600-41510200 Flanking Bivalent TSS/Enh Brain Cingulate Gyrus brain
20 chr5:41509600-41510400 Active TSS Esophagus oesophagus
21 chr5:41509600-41510600 Bivalent/Poised TSS Brain Dorsolateral Prefrontal Cortex brain
22 chr5:41509600-41510600 Flanking Active TSS Lung lung
23 chr5:41509600-41510600 Flanking Bivalent TSS/Enh Skeletal Muscle Male skeletal muscle
24 chr5:41509600-41510800 Bivalent/Poised TSS ES-UCSF4 Cell Line embryonic stem cell
25 chr5:41509600-41510800 Flanking Bivalent TSS/Enh Skeletal Muscle Female skeletal muscle
26 chr5:41509600-41510800 ZNF genes & repeats Spleen Spleen
27 chr5:41509600-41511000 Bivalent/Poised TSS iPS-15b Cell Line embryonic stem cell
28 chr5:41509600-41511000 Bivalent/Poised TSS Rectal Smooth Muscle rectum
29 chr5:41509800-41510200 Flanking Bivalent TSS/Enh iPS-20b Cell Line embryonic stem cell
30 chr5:41509800-41510200 Bivalent/Poised TSS Foreskin Fibroblast Primary Cells skin01 Skin
31 chr5:41509800-41510200 Active TSS Colon Smooth Muscle Colon
32 chr5:41509800-41510200 Flanking Bivalent TSS/Enh Fetal Intestine Large intestine
33 chr5:41509800-41510200 Bivalent Enhancer Fetal Muscle Trunk muscle
34 chr5:41509800-41510200 Bivalent/Poised TSS Fetal Stomach stomach
35 chr5:41509800-41510200 Flanking Active TSS A549 lung
36 chr5:41509800-41510400 Flanking Bivalent TSS/Enh H1 Cell Line embryonic stem cell
37 chr5:41509800-41510400 Bivalent Enhancer IMR90 fetal lung fibroblasts Cell Line lung
38 chr5:41509800-41510400 Bivalent Enhancer Foreskin Melanocyte Primary Cells skin01 Skin
39 chr5:41509800-41510400 Bivalent Enhancer Foreskin Melanocyte Primary Cells skin03 Skin
40 chr5:41509800-41510400 Flanking Bivalent TSS/Enh Brain Hippocampus Middle brain
41 chr5:41509800-41510400 Flanking Bivalent TSS/Enh Brain Inferior Temporal Lobe brain
42 chr5:41509800-41510600 Bivalent Enhancer Placenta Placenta
43 chr5:41509800-41510800 Flanking Bivalent TSS/Enh H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
44 chr5:41509800-41510800 Flanking Bivalent TSS/Enh Adipose Nuclei Adipose
45 chr5:41509800-41510800 Bivalent/Poised TSS Colonic Mucosa Colon
46 chr5:41509800-41510800 Flanking Bivalent TSS/Enh Fetal Adrenal Gland Adrenal Gland
47 chr5:41509800-41511200 Bivalent/Poised TSS H9 Cell Line embryonic stem cell
48 chr5:41509800-41511200 Bivalent/Poised TSS HUES6 Cell Line embryonic stem cell
49 chr5:41509800-41511200 Bivalent/Poised TSS HUES64 Cell Line embryonic stem cell
50 chr5:41509800-41511200 Active TSS Aorta Aorta

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Last update: Aug 31, 2015