Variant report

Variant	rs530907827
Chromosome Location	chr16:69976239-69976240
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:69970218..69972832-chr16:69974384..69976612,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000198373	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:20 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062171	chr16:69854267-70188585	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
2	nsv542941	chr16:69854267-70188585	Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
3	nsv1059249	chr16:69854467-70188446	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
4	nsv542942	chr16:69854467-70188446	Weak transcription Strong transcription Active TSS Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
5	esv2758428	chr16:69855122-70313222	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	96 gene(s)	inside rSNPs	diseases
6	esv2758652	chr16:69855122-70313222	Weak transcription Enhancers Bivalent/Poised TSS Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	96 gene(s)	inside rSNPs	diseases
7	esv1792580	chr16:69950347-70005207	Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Strong transcription Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
8	esv1801278	chr16:69951043-70050770	Enhancers Bivalent Enhancer Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
9	esv1829103	chr16:69951043-70050770	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
10	nsv1853	chr16:69962296-70268856	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
11	esv1824931	chr16:69968850-70230516	Weak transcription Active TSS Strong transcription Enhancers Genic enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
12	esv1829372	chr16:69968850-70230516	Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
13	esv1830874	chr16:69968850-70298988	Strong transcription Weak transcription Genic enhancers Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
14	esv15512	chr16:69970836-70032614	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
15	esv2754644	chr16:69971965-70191118	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
16	esv1823631	chr16:69975086-70103765	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	10 gene(s)	inside rSNPs	diseases
17	esv3415189	chr16:69975817-69976291	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
18	nsv1058789	chr16:69976021-70180213	Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases
19	nsv9452	chr16:69976026-70008199	Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
20	esv2762188	chr16:69976033-70281778	Strong transcription Active TSS Weak transcription Enhancers Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:69947600-69977200	Strong transcription	Primary neutrophils fromperipheralblood	blood
2	chr16:69948200-69977400	Strong transcription	Monocytes-CD14+_RO01746	blood
3	chr16:69948400-69977400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr16:69957400-69977400	Strong transcription	Primary monocytes fromperipheralblood	blood
5	chr16:69957800-69977200	Strong transcription	Fetal Intestine Small	intestine
6	chr16:69959000-69976400	Strong transcription	Thymus	Thymus
7	chr16:69959000-69977200	Strong transcription	Fetal Intestine Large	intestine
8	chr16:69959000-69977600	Strong transcription	Primary T cells from cord blood	blood
9	chr16:69961400-69976600	Weak transcription	Right Atrium	heart
10	chr16:69961400-69977000	Weak transcription	HSMM	muscle
11	chr16:69961600-69976800	Strong transcription	Spleen	Spleen
12	chr16:69962400-69976800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr16:69962400-69976800	Strong transcription	Rectal Mucosa Donor 29	rectum
14	chr16:69962600-69976800	Strong transcription	Rectal Mucosa Donor 31	rectum
15	chr16:69963200-69976600	Strong transcription	Fetal Brain Female	brain
16	chr16:69963200-69977000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr16:69963400-69977200	Strong transcription	Primary B cells from peripheral blood	blood
18	chr16:69963600-69976400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr16:69964200-69976400	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr16:69964200-69976800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
21	chr16:69964400-69977400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
22	chr16:69964600-69976400	Strong transcription	Esophagus	oesophagus
23	chr16:69965000-69976400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr16:69967200-69977000	Strong transcription	Brain Substantia Nigra	brain
25	chr16:69970800-69977400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr16:69970800-69978800	Weak transcription	Pancreatic Islets	Pancreatic Islet
27	chr16:69971200-69976400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
28	chr16:69971200-69977000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
29	chr16:69971600-69976800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
30	chr16:69971800-69977000	Weak transcription	HMEC	breast
31	chr16:69973600-69977200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
32	chr16:69973600-69977200	Weak transcription	Muscle Satellite Cultured Cells	--
33	chr16:69973800-69976600	Weak transcription	H1 Cell Line	embryonic stem cell
34	chr16:69973800-69977000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
35	chr16:69973800-69977000	Weak transcription	Primary hematopoietic stem cells	blood
36	chr16:69974000-69976800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
37	chr16:69974000-69977000	Weak transcription	Dnd41	blood
38	chr16:69974400-69976800	Weak transcription	HUES6 Cell Line	embryonic stem cell
39	chr16:69974400-69976800	Weak transcription	Rectal Smooth Muscle	rectum
40	chr16:69974600-69976800	Weak transcription	GM12878-XiMat	blood
41	chr16:69974600-69977000	Weak transcription	Primary B cells from cord blood	blood
42	chr16:69974600-69977400	Weak transcription	Ovary	ovary
43	chr16:69974600-69977400	Weak transcription	HSMMtube	muscle
44	chr16:69974600-69978000	Weak transcription	NH-A	brain
45	chr16:69974600-69986600	Weak transcription	HepG2	liver
46	chr16:69975000-69976600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr16:69975000-69976600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
48	chr16:69975000-69976800	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr16:69975000-69976800	Weak transcription	Left Ventricle	heart
50	chr16:69975000-69977000	Weak transcription	H9 Cell Line	embryonic stem cell

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