Variant report

Variant	rs530925056
Chromosome Location	chr10:23727099-23727100
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr10:23726938-23727186	MCF10A-Er-Src	breast:	n/a	n/a
2	POLR2A	chr10:23726898-23730348	Hela-S3	cervix:	n/a	n/a
3	POLR2A	chr10:23727029-23729576	MCF-7	breast:	n/a	n/a
4	E2F6	chr10:23726943-23728776	K562	blood:	n/a	chr10:23728108-23728117 chr10:23728168-23728180 chr10:23728171-23728180 chr10:23727864-23727873 chr10:23727744-23727756 chr10:23727989-23727998 chr10:23727745-23727756
5	E2F6	chr10:23726867-23728142	H1-hESC	embryonic stem cell:	n/a	chr10:23728108-23728117 chr10:23727864-23727873 chr10:23727744-23727756 chr10:23727989-23727998 chr10:23727745-23727756
6	E2F6	chr10:23727085-23727434	K562	blood:	n/a	n/a
7	CTCF	chr10:23727080-23727230	Caco-2	colon:	n/a	n/a
8	E2F6	chr10:23727019-23727428	H1-hESC	embryonic stem cell:	n/a	n/a
9	POLR2A	chr10:23727029-23727151	MCF-7	breast:	n/a	n/a

Variant related genes	Relation type
OTUD1	TF binding region

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv825305	chr10:23698620-23740919	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv975033	chr10:23726218-23738848	Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23721400-23727400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr10:23721800-23727200	Weak transcription	HMEC	breast
3	chr10:23721800-23727400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr10:23721800-23727400	Weak transcription	NHEK	skin
5	chr10:23722000-23727200	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr10:23722000-23727200	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr10:23724800-23727200	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr10:23725200-23727200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr10:23725600-23727400	Enhancers	Stomach Mucosa	stomach
10	chr10:23726200-23727200	Enhancers	Primary neutrophils fromperipheralblood	blood
11	chr10:23726400-23727400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr10:23726600-23727400	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr10:23726800-23727200	Enhancers	Primary B cells from cord blood	blood
14	chr10:23726800-23727400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr10:23726800-23727400	Enhancers	Brain Hippocampus Middle	brain
16	chr10:23726800-23727400	Enhancers	Placenta	Placenta
17	chr10:23727000-23727200	Enhancers	Rectal Smooth Muscle	rectum
18	chr10:23727000-23727200	Enhancers	Hela-S3	cervix
19	chr10:23727000-23727200	Enhancers	K562	blood
20	chr10:23727000-23727400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr10:23727000-23727400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr10:23727000-23727400	Enhancers	Primary B cells from peripheral blood	blood
23	chr10:23727000-23727400	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
24	chr10:23727000-23727400	Enhancers	Primary T helper naive cells from peripheral blood	blood
25	chr10:23727000-23727400	Enhancers	Adipose Nuclei	Adipose
26	chr10:23727000-23727400	Enhancers	Brain Substantia Nigra	brain
27	chr10:23727000-23727400	Enhancers	Fetal Intestine Large	intestine
28	chr10:23727000-23727400	Enhancers	Fetal Muscle Trunk	muscle
29	chr10:23727000-23727400	Enhancers	Fetal Muscle Leg	muscle
30	chr10:23727000-23727400	Enhancers	Left Ventricle	heart
31	chr10:23727000-23727400	Enhancers	Right Atrium	heart
32	chr10:23727000-23727600	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
33	chr10:23727000-23727800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
34	chr10:23727000-23728400	Active TSS	ES-WA7 Cell Line	embryonic stem cell

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