Variant report

Variant	rs530944673
Chromosome Location	chr7:98971071-98971072
allele	-/TTG
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:16)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:16 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:98921655..98927239-chr7:98969297..98973851,7	MCF-7	breast:
2	chr7:98970391..98972681-chr7:99033800..99036309,2	K562	blood:
3	chr7:98971053..98973782-chr7:99000134..99003212,3	MCF-7	breast:
4	chr7:98923500..98925484-chr7:98970656..98974432,3	K562	blood:
5	chr7:98923522..98925484-chr7:98970656..98973873,3	K562	blood:
6	chr7:98954568..98956787-chr7:98970778..98974586,3	K562	blood:
7	chr7:98970407..98975516-chr7:99002028..99009396,17	MCF-7	breast:
8	chr7:98970740..98974571-chr7:99004724..99008680,16	MCF-7	breast:
9	chr7:98970545..98974719-chr7:98992685..98998543,7	MCF-7	breast:
10	chr7:98970980..98974747-chr7:98986775..98992580,7	MCF-7	breast:
11	chr7:98970993..98974296-chr7:98982055..98984760,3	K562	blood:
12	chr7:98970906..98973809-chr7:99047334..99049746,3	K562	blood:
13	chr7:98968876..98974378-chr7:99004810..99008269,11	K562	blood:
14	chr7:98966757..98974253-chr7:98988800..98995304,7	K562	blood:
15	chr7:98970707..98973711-chr7:99034539..99037806,4	MCF-7	breast:
16	chr7:98959822..98968172-chr7:98968902..98974586,14	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000106246	Chromatin interaction
ENSG00000160917	Chromatin interaction
ENSG00000106244	Chromatin interaction
ENSG00000106245	Chromatin interaction
ENSG00000241685	Chromatin interaction
ENSG00000130429	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3433144	chr7:98777878-99060209	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	nsv831068	chr7:98819572-99006481	Weak transcription Active TSS Genic enhancers Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
3	nsv831069	chr7:98948128-99127584	Active TSS Genic enhancers Weak transcription Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
4	esv3399853	chr7:98970974-98971373	Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
5	esv3520233	chr7:98971038-98971321	Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
6	esv3409473	chr7:98971041-98973589	Weak transcription Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:98924600-98971600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr7:98935600-98971600	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr7:98953800-98971600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr7:98955000-98971600	Weak transcription	Right Atrium	heart
5	chr7:98959400-98971600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
6	chr7:98961200-98971600	Weak transcription	Small Intestine	intestine
7	chr7:98962200-98971600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr7:98962800-98971400	Weak transcription	Primary B cells from cord blood	blood
9	chr7:98964600-98971600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr7:98964600-98971600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr7:98964800-98971400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
12	chr7:98964800-98971400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr7:98965000-98971400	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr7:98965000-98971600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
15	chr7:98965000-98971600	Weak transcription	HMEC	breast
16	chr7:98965000-98971800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr7:98965000-98971800	Weak transcription	Brain Substantia Nigra	brain
18	chr7:98965200-98971400	Weak transcription	Primary B cells from peripheral blood	blood
19	chr7:98965200-98971400	Weak transcription	Primary hematopoietic stem cells	blood
20	chr7:98965200-98971400	Weak transcription	Primary T helper cells PMA-I stimulated	--
21	chr7:98965200-98971400	Weak transcription	Primary T helper cells fromperipheralblood	blood
22	chr7:98965200-98971400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
23	chr7:98965200-98971600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
24	chr7:98965200-98971600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
25	chr7:98965200-98971600	Weak transcription	Aorta	Aorta
26	chr7:98965200-98971600	Weak transcription	Esophagus	oesophagus
27	chr7:98965200-98971600	Weak transcription	Gastric	stomach
28	chr7:98965200-98971600	Weak transcription	HUVEC	blood vessel
29	chr7:98965200-98971800	Weak transcription	Brain Cingulate Gyrus	brain
30	chr7:98965400-98971600	Weak transcription	Cortex derived primary cultured neurospheres	brain
31	chr7:98966600-98971200	Weak transcription	Primary monocytes fromperipheralblood	blood
32	chr7:98966600-98971600	Weak transcription	GM12878-XiMat	blood
33	chr7:98966800-98971600	Weak transcription	Dnd41	blood
34	chr7:98966800-98971800	Weak transcription	Hela-S3	cervix
35	chr7:98967000-98971400	Weak transcription	A549	lung
36	chr7:98967200-98971600	Weak transcription	Brain Inferior Temporal Lobe	brain
37	chr7:98967400-98971800	Weak transcription	Brain Germinal Matrix	brain
38	chr7:98967600-98971600	Weak transcription	Stomach Smooth Muscle	stomach
39	chr7:98968200-98971400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr7:98968200-98971800	Weak transcription	HSMMtube	muscle
41	chr7:98968400-98971600	Weak transcription	Fetal Stomach	stomach
42	chr7:98968600-98971400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
43	chr7:98968800-98971400	Weak transcription	K562	blood
44	chr7:98969000-98971600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
45	chr7:98969400-98971600	Enhancers	Fetal Muscle Trunk	muscle
46	chr7:98969600-98971600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr7:98970000-98971600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr7:98970200-98971400	Enhancers	Primary T cells fromperipheralblood	blood
49	chr7:98970200-98971400	Enhancers	Adipose Nuclei	Adipose
50	chr7:98970200-98971400	Enhancers	Monocytes-CD14+_RO01746	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links