Variant report

Variant	rs530999024
Chromosome Location	chr3:67787883-67787884
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv470638	chr3:67367341-67814738	Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	esv3359258	chr3:67589615-67828274	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv1002010	chr3:67785913-68312064	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:67721400-67800400	Weak transcription	Left Ventricle	heart
2	chr3:67775800-67790200	Weak transcription	Psoas Muscle	Psoas
3	chr3:67785600-67788200	Enhancers	Primary T helper cells PMA-I stimulated	--
4	chr3:67785800-67790000	Enhancers	Primary T killer memory cells from peripheral blood	blood
5	chr3:67785800-67791600	Enhancers	Primary T helper cells fromperipheralblood	blood
6	chr3:67786000-67790000	Enhancers	Primary T cells fromperipheralblood	blood
7	chr3:67786000-67791600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
8	chr3:67786200-67788400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr3:67786200-67790200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
10	chr3:67786600-67790000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
11	chr3:67787400-67788200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
12	chr3:67787400-67788400	Enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr3:67787600-67788000	Enhancers	Primary T cells from cord blood	blood
14	chr3:67787600-67788800	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
15	chr3:67787600-67788800	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
16	chr3:67787600-67789200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links