Variant report

Variant	rs531013897
Chromosome Location	chr15:72147026-72147027
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904334	chr15:71737376-72177659	Strong transcription Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1036938	chr15:71948106-72272855	Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Enhancers Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	esv3331306	chr15:72049818-72427559	Strong transcription ZNF genes & repeats Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
4	esv3433206	chr15:72049838-72427529	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
5	nsv569906	chr15:72126034-72218036	Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
6	nsv516871	chr15:72126034-72325595	Weak transcription Strong transcription Active TSS ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
7	nsv1042740	chr15:72128799-72482239	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
8	nsv542426	chr15:72128799-72482239	Flanking Active TSS Strong transcription Weak transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
9	nsv904336	chr15:72145937-72329906	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:72114600-72190600	Weak transcription	Pancreas	Pancrea
2	chr15:72119200-72171800	Weak transcription	Psoas Muscle	Psoas
3	chr15:72120600-72147400	Weak transcription	Small Intestine	intestine
4	chr15:72122200-72189400	Weak transcription	Right Ventricle	heart
5	chr15:72122400-72195000	Weak transcription	NHEK	skin
6	chr15:72122600-72171800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
7	chr15:72122600-72185200	Weak transcription	Esophagus	oesophagus
8	chr15:72122600-72195800	Weak transcription	Gastric	stomach
9	chr15:72129200-72148000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr15:72131200-72148200	Strong transcription	Placenta	Placenta
11	chr15:72131800-72192800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
12	chr15:72134000-72149000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
13	chr15:72135200-72147600	Strong transcription	Primary T cells from cord blood	blood
14	chr15:72136200-72148400	Strong transcription	Primary B cells from peripheral blood	blood
15	chr15:72136200-72148400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr15:72136200-72149000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr15:72136400-72148400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr15:72137000-72156400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
19	chr15:72138200-72172400	Weak transcription	HUVEC	blood vessel
20	chr15:72140200-72171800	Weak transcription	HMEC	breast
21	chr15:72141400-72174200	Weak transcription	Fetal Brain Male	brain
22	chr15:72142600-72150800	Weak transcription	HSMM	muscle
23	chr15:72142600-72151200	Weak transcription	HSMMtube	muscle
24	chr15:72142600-72151400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
25	chr15:72142600-72154000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
26	chr15:72142600-72154600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
27	chr15:72142600-72166400	Weak transcription	GM12878-XiMat	blood
28	chr15:72142600-72170200	Weak transcription	Placenta Amnion	Placenta Amnion
29	chr15:72142600-72171800	Weak transcription	NH-A	brain
30	chr15:72142600-72183400	Weak transcription	Brain Angular Gyrus	brain
31	chr15:72142600-72189600	Weak transcription	NHLF	lung
32	chr15:72142600-72199200	Weak transcription	Hela-S3	cervix
33	chr15:72142800-72151200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr15:72142800-72151200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr15:72142800-72170000	Weak transcription	HUES64 Cell Line	embryonic stem cell
36	chr15:72142800-72171800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
37	chr15:72142800-72172000	Weak transcription	Dnd41	blood
38	chr15:72142800-72176000	Weak transcription	HUES48 Cell Line	embryonic stem cell
39	chr15:72142800-72184800	Weak transcription	A549	lung
40	chr15:72142800-72190200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr15:72143000-72149000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr15:72143000-72163400	Weak transcription	Fetal Intestine Small	intestine
43	chr15:72143000-72172200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
44	chr15:72143000-72190600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
45	chr15:72143000-72190600	Weak transcription	Colonic Mucosa	Colon
46	chr15:72143200-72152000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
47	chr15:72143200-72152200	Weak transcription	Brain Substantia Nigra	brain
48	chr15:72143400-72151400	Weak transcription	Fetal Kidney	kidney
49	chr15:72143800-72152000	Weak transcription	Rectal Smooth Muscle	rectum
50	chr15:72143800-72160200	Weak transcription	Aorta	Aorta

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links