Variant report

Variant	rs531049973
Chromosome Location	chr7:21811327-21811328
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018133	chr7:21740118-22055283	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv830922	chr7:21793386-21964675	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases
3	nsv470177	chr7:21801125-21817048	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv5656	chr7:21810397-21816672	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:21805600-21813800	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr7:21805600-21813800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr7:21806200-21812400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr7:21807200-21811600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr7:21810000-21812800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr7:21810000-21814000	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr7:21810000-21814600	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr7:21810200-21813200	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr7:21810400-21812400	Bivalent Enhancer	Fetal Brain Male	brain
10	chr7:21810400-21813000	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr7:21810400-21813600	Enhancers	iPS-20b Cell Line	embryonic stem cell
12	chr7:21810600-21811400	Enhancers	H1 Cell Line	embryonic stem cell
13	chr7:21810600-21813200	Enhancers	Colon Smooth Muscle	Colon
14	chr7:21810600-21813600	Enhancers	HUES6 Cell Line	embryonic stem cell
15	chr7:21810800-21811600	Enhancers	Brain Substantia Nigra	brain
16	chr7:21810800-21812000	Active TSS	Stomach Smooth Muscle	stomach
17	chr7:21810800-21812200	Enhancers	Fetal Brain Female	brain
18	chr7:21810800-21812200	Enhancers	Fetal Heart	heart
19	chr7:21810800-21812800	Enhancers	ES-I3 Cell Line	embryonic stem cell
20	chr7:21810800-21814000	Enhancers	Brain Angular Gyrus	brain
21	chr7:21811000-21811400	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
22	chr7:21811000-21811400	Flanking Active TSS	Brain Germinal Matrix	brain
23	chr7:21811000-21811600	Enhancers	Brain Inferior Temporal Lobe	brain
24	chr7:21811000-21811800	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr7:21811000-21811800	Enhancers	Duodenum Smooth Muscle	Duodenum
26	chr7:21811000-21813400	Enhancers	Brain Cingulate Gyrus	brain
27	chr7:21811200-21811400	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr7:21811200-21811400	Enhancers	Cortex derived primary cultured neurospheres	brain
29	chr7:21811200-21811400	Flanking Active TSS	Brain Anterior Caudate	brain
30	chr7:21811200-21811600	Enhancers	Brain Hippocampus Middle	brain
31	chr7:21811200-21812400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
32	chr7:21811200-21812600	Enhancers	Fetal Stomach	stomach
33	chr7:21811200-21812800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
34	chr7:21811200-21813600	Enhancers	Rectal Smooth Muscle	rectum
35	chr7:21811200-21813800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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