Variant report

Variant	rs531057460
Chromosome Location	chr6:33788227-33788228
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885773	chr6:33778964-33813043	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv885774	chr6:33778964-33840121	Weak transcription Enhancers Genic enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv885775	chr6:33788055-33828178	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:33776400-33792400	Weak transcription	Right Atrium	heart
2	chr6:33781800-33792400	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr6:33782200-33790600	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr6:33782800-33790600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr6:33785400-33788800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr6:33785400-33790200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr6:33787600-33788800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr6:33787600-33790000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr6:33788000-33788400	Enhancers	Brain Cingulate Gyrus	brain
10	chr6:33788200-33788400	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr6:33788200-33788400	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr6:33788200-33788400	Bivalent Enhancer	Fetal Muscle Trunk	muscle
13	chr6:33788200-33788400	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
14	chr6:33788200-33788800	Enhancers	H1 Cell Line	embryonic stem cell
15	chr6:33788200-33790200	Enhancers	Primary hematopoietic stem cells short term culture	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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