Variant report

Variant	rs531059453
Chromosome Location	chr6:14009888-14009889
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv600996	chr6:13954632-14014793	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	esv2762579	chr6:14009619-14011791	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:14003000-14012800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:14008200-14011000	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr6:14008600-14010400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr6:14008600-14011000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr6:14009000-14010600	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr6:14009200-14010800	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr6:14009200-14011000	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr6:14009400-14010400	Enhancers	H9 Cell Line	embryonic stem cell
9	chr6:14009400-14010400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr6:14009400-14010600	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr6:14009600-14010000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr6:14009600-14010200	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr6:14009600-14010600	Enhancers	H1 Cell Line	embryonic stem cell
14	chr6:14009800-14010000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr6:14009800-14010200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr6:14009800-14010200	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links