Variant report

Variant	rs531092515
Chromosome Location	chr10:27608740-27608741
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:26985698..26986799-chr10:27608358..27609419,4	HCT-116	colon:
2	chr10:27607489..27609150-chr10:27638206..27640628,2	MCF-7	breast:
3	chr10:26985474..26987624-chr10:27607358..27610341,4	MCF-7	breast:
4	chr10:26984968..26988044-chr10:27607336..27609040,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000213770	Chromatin interaction
ENSG00000148459	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:29 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3337781	chr10:27472216-27666703	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	nsv8614	chr10:27504487-27828406	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv550241	chr10:27569521-28025771	Enhancers ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
4	nsv1045257	chr10:27572440-27926946	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
5	nsv550242	chr10:27577568-27705855	Flanking Active TSS Active TSS Bivalent Enhancer Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
6	nsv550243	chr10:27577773-27705855	Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
7	nsv894981	chr10:27581845-27642966	Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
8	nsv466840	chr10:27581845-27705855	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
9	nsv550244	chr10:27581845-27705855	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
10	esv2764124	chr10:27593427-27712416	Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
11	nsv894982	chr10:27595741-27713525	Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
12	nsv430148	chr10:27600380-27734720	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
13	nsv550245	chr10:27601739-27638865	Enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
14	nsv550246	chr10:27601739-27694764	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
15	nsv430150	chr10:27602959-27701920	Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
16	esv2750889	chr10:27602959-27706601	Weak transcription Active TSS ZNF genes & repeats Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
17	nsv430149	chr10:27602959-27734720	Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
18	nsv550247	chr10:27606435-27639265	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
19	nsv550248	chr10:27606435-27700887	Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
20	nsv550249	chr10:27606435-27701737	Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
21	nsv550250	chr10:27606954-27705855	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
22	nsv1042004	chr10:27607185-27691799	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
23	nsv1049369	chr10:27607185-27696440	Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
24	nsv1054401	chr10:27607185-27701920	Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
25	nsv1054468	chr10:27607185-27702509	Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
26	nsv1044075	chr10:27607185-27706601	Bivalent/Poised TSS Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
27	nsv1053324	chr10:27607185-27709399	Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
28	nsv1043338	chr10:27607905-27702509	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
29	nsv1053549	chr10:27607905-27713525	Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27608200-27608800	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
2	chr10:27608200-27609200	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr10:27608200-27609200	Enhancers	Primary B cells from peripheral blood	blood
4	chr10:27608200-27609200	Enhancers	Fetal Brain Male	brain
5	chr10:27608200-27609400	Enhancers	Esophagus	oesophagus
6	chr10:27608200-27609800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr10:27608400-27608800	Enhancers	Stomach Mucosa	stomach
8	chr10:27608400-27609000	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
9	chr10:27608400-27609000	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr10:27608400-27609000	Flanking Active TSS	Primary B cells from cord blood	blood
11	chr10:27608400-27609000	Active TSS	Fetal Kidney	kidney
12	chr10:27608400-27609000	Flanking Active TSS	GM12878-XiMat	blood
13	chr10:27608400-27609200	Active TSS	ES-I3 Cell Line	embryonic stem cell
14	chr10:27608400-27609200	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
15	chr10:27608400-27609200	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
16	chr10:27608400-27609200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr10:27608400-27609200	Flanking Active TSS	Primary hematopoietic stem cells	blood
18	chr10:27608400-27609200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr10:27608400-27609200	Bivalent/Poised TSS	Brain Hippocampus Middle	brain
20	chr10:27608400-27609200	Active TSS	A549	lung
21	chr10:27608400-27609200	Flanking Active TSS	HUVEC	blood vessel
22	chr10:27608400-27609200	Active TSS	NH-A	brain
23	chr10:27608400-27609400	Enhancers	Fetal Heart	heart
24	chr10:27608400-27609400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
25	chr10:27608600-27608800	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
26	chr10:27608600-27608800	Flanking Bivalent TSS/Enh	Primary T helper memory cells from peripheral blood 1	blood
27	chr10:27608600-27608800	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr10:27608600-27608800	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr10:27608600-27608800	Flanking Active TSS	Liver	Liver
30	chr10:27608600-27608800	Active TSS	Colonic Mucosa	Colon
31	chr10:27608600-27608800	Active TSS	Left Ventricle	heart
32	chr10:27608600-27609000	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr10:27608600-27609000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr10:27608600-27609000	Active TSS	iPS-20b Cell Line	embryonic stem cell
35	chr10:27608600-27609000	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
36	chr10:27608600-27609000	Active TSS	Primary neutrophils fromperipheralblood	blood
37	chr10:27608600-27609000	Bivalent/Poised TSS	Primary T helper cells PMA-I stimulated	--
38	chr10:27608600-27609000	Active TSS	Primary T helper cells fromperipheralblood	blood
39	chr10:27608600-27609000	Flanking Bivalent TSS/Enh	Primary T regulatory cells fromperipheralblood	blood
40	chr10:27608600-27609000	Bivalent Enhancer	Primary T killer naive cells fromperipheralblood	blood
41	chr10:27608600-27609000	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
42	chr10:27608600-27609000	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr10:27608600-27609000	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
44	chr10:27608600-27609000	Bivalent/Poised TSS	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr10:27608600-27609000	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
46	chr10:27608600-27609000	Active TSS	Adipose Nuclei	Adipose
47	chr10:27608600-27609000	Active TSS	Aorta	Aorta
48	chr10:27608600-27609000	Active TSS	Brain Angular Gyrus	brain
49	chr10:27608600-27609000	Active TSS	Duodenum Mucosa	Duodenum
50	chr10:27608600-27609000	Active TSS	Fetal Brain Female	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links